Rhagoletis zephyria (snowberry fruit fly): 108380284
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Entry
108380284 CDS
T08513
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108380284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108380284
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108380284
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
HBS1_N
MMR_HSR1
GIP1_N
AAA_22
DO-GTPase2
AAA_29
Motif
Other DBs
NCBI-GeneID:
108380284
NCBI-ProteinID:
XP_017492145
LinkDB
All DBs
Position
Unknown
AA seq
555 aa
AA seq
DB search
MARHRNIRGLNYEEEYNDVYDEYSRSVEEESCISPRTARQYLYGDDDVVKSLEKVEEEEG
YGDNRNDDEGDEGEEDSTDPSLIDAKTYSCLEAIQDVVGETIPEEVIIATIKKCKYDSEK
ALDVLLNRSTSHNTTTTKKSSQPQPSQKAQQIPPPQDKSKTAVAKSGAGAPVRNNSKGDL
TKLNNTGESKSSGSKKSTSSSGNSLLEPPPSSKPSNLTAETNPPNITPTSSGTSSPYSTP
KLISRQSGQHLKQMTTPKPAADILELYGRKRVAPGQRLNLNLVIVGHVDAGKSTIMGHLL
ALLGEVPKKTLHRNEVDARKAGKASFSFAWLLDETEEERSRGITIDVGQQRFTTERRAVT
ILDAPGHRDFIPNMIAGATKADVALLVIDATKGEFETGFEAGGQTAEHTVLLRSLGVSQL
AVVVNKLDNVGFSEERYREIVDRLKKFLKAVGFKTDGDSAAVHFVPVSGLTGDNLVTASK
EAAFGWYSGGPTLVQIIDGFTPHERPVTKPFRLAVNDLFKGQTSGVCVAGKVDSGFVEVG
QRLLIRPANELVTVK
NT seq
1666 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtcaccgtaatatccgcggcctcaactacgaagaagagtacaacgatgtctac
gatgagtacagtcgctcggtggaagaggaatcttgcatctcgccgcgaacggcacgtcag
tatctgtacggcgacgatgacgtcgtgaagagcctggagaaggttgaggaggaggaaggt
tacggcgacaacaggaacgacgacgaaggtgacgaaggcgaagaggactccaccgatcct
tcgctcattgacgccaaaacatactcatgtctggaggcgattcaggacgtcgtcggcgag
acgattcccgaggaggtcatcatcgcgacgatcaagaagtgcaagtacgactcggagaag
gcgctcgacgtgctgctcaaccgatccaccagccacaacactaccaccaccaagaaaagc
tcacaaccgcaaccatctcagaaggcccagcaaatacctcctcctcaagataaatccaaa
acagctgtcgctaaatcgggtgctggtgctccggtgcgaaacaactctaaaggcgatctg
acaaagctaaacaacaccggtgaatcaaagtcaagcggcagtaaaaagtcgaccagcagc
agtggcaacagcctccttgagccacctccttcctccaagccatcaaatctaacagcggaa
actaaccccccaaacattacccccacctcttcgggcacctcttcaccctactccacgccc
aagctaatctcccgacagagtggccagcacctgaagcagatgacgacgccgaagccggcg
gcggacattctcgagctgtacgggcggaaacgggtcgcccccggccaacggctgaacctc
aacctggtcatcgtcggccacgtggacgccggcaagagcaccatcatgggccacctgctg
gcgctgctcggcgaggtgcctaagaagacgttgcaccggaacgaggtggacgcgcggaag
gcgggcaaggcgagcttcagcttcgcctggctcctcgatgagaccgaggaggagcgcagc
cgtggcatcaccatcgacgtcggtcagcagcgcttcaccacggagcgccgcgcggtgacc
atcctcgacgcgcccggccaccgcgactttatccccaacatgatcgccggcgcgacgaag
gccgacgtcgccctgctggtgattgacgccaccaagggcgagttcgagaccggcttcgag
gcgggcggacagacggcggagcacaccgtcctcctccgctcgcttggcgtcagtcagctg
gcggtggtagtgaacaagctggacaatgtcggcttcagcgaggagcgctaccgggaaatt
gtcgaccgcctgaagaagtttctcaaggcggtcggcttcaagactgatggtgacagtgca
gcggtgcactttgtccctgtcagtgggctgacgggcgacaatctggtgacggcctcgaag
gaggccgcttttgggtggtacagtggcgggccgactctggtgcagattatcgatggcttc
acgccacacgagcgcccggtaacgaagccctttcgcctggcggtgaatgacctcttcaag
gggcagacgtcgggcgtctgcgtcgccggcaaggtcgactcgggctttgtggaggtcggc
caacggctgctgattcgccccgccaatgagctggtcacggtgaaga
DBGET
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