Rhagoletis zephyria (snowberry fruit fly): 108380565
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Entry
108380565 CDS
T08513
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108380565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rze03019
]
108380565
Messenger RNA biogenesis [BR:
rze03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108380565
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
108380565
NCBI-ProteinID:
XP_017492436
LinkDB
All DBs
Position
Unknown
AA seq
667 aa
AA seq
DB search
MADDTNEDSWLYGTSNPDSTTNEENVDANVGIDNGRPLLSQKSENEATALGGSGDVLAPK
QVEAHDEEEPFGEFEDPAQEMEEDEEAAAAAASTAADTTDAGEDTGENAQQQSKTSEDGE
ANSDDEDDSDDDINVVIGDIKAGPSTYNIKQRSNLLTGPPGSGQEKTKSGAPGGKFSVED
FEGVGTINGVPAHEFSIDSLEDKPWRKPGADITDYFNYGFNEETWRSYCERQKRYRIQES
GIGLASLTQNLNQSGERQHEGTGGGGQITTIMPGLLSNDQMQMPPPGILPPPQGMHHGPP
RMGMGMPRGPRPISTTSSKENPIQVMTAECREYSRPGTIAQMPPNFGAPQPPEEPYFPEP
ETFDYGYEPTQESQWNNENPGWHPSSGIKELTPGPAMVPPPAAGMSGPPGVPPMGVPPPQ
IGGPPPQMRQHPPIMPGMPPPNMGMGPPPPGMGMMMGPGGGPPMRMPMGPPRMMGPHGGG
PPNPGHMDRERHDRDRERERDYERNDRRERDRDRERDRDRERETERERERERERERERPR
RERSRSRDKSRRRSKSREKERDRERERERDRDRDGERERERDRSEKLDPDPERAVDEDRE
RRRRERDRERERERSRRERSRSREKTRRRSKSREKDRERSSKTVGTSSSTSRSEKKKSHR
KDKEEEE
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgatacgaacgaagacagctggctgtatggcacgtccaatcccgattccacg
acgaatgaagagaatgtggatgctaatgtcggtatagataatgggagaccgctgttgtct
cagaaatctgaaaatgaagcgaccgcattgggtggaagtggtgatgtgttggcaccaaaa
caggtcgaagcgcatgatgaggaagaaccattcggtgagtttgaagatccggcccaggag
atggaagaggacgaggaagctgcggctgctgccgccagcaccgctgccgatactactgac
gccggcgaagatacaggcgaaaatgctcaacaacagtcaaaaacttcggaagatggtgag
gcgaactcggacgatgaagacgactctgatgatgatatcaatgttgttattggcgatata
aaggcaggacccagcacatataatattaaacaacgttctaacttattgactggacctcct
ggttcaggtcaagagaaaaccaagtctggtgcaccgggcgggaaatttagtgttgaagat
tttgaaggtgttggtactataaacggtgtgccagcacacgaatttagtatcgattccttg
gaagataagccttggcgaaaaccaggtgcagatattactgattattttaattacgggttc
aatgaagagacatggcgctcttattgcgagcgtcaaaaacgatatcgtatacaggagagc
ggcattgggttggcaagtttgacacaaaatcttaatcaatcaggcgaacgacaacatgag
ggtactggaggtggaggccaaataaccacaataatgcccggcctattatcaaatgatcag
atgcaaatgccacctccgggcattttaccaccccctcagggtatgcaccatggtccgcca
cgtatgggcatgggtatgccccgtggacctcgaccgatcagtactaccagcagcaaggag
aatcctatccaagtaatgaccgccgaatgccgtgaatattcgagaccaggtacgatagcc
caaatgccgccgaactttggtgcaccacaacccccggaagagccatactttccagaacct
gaaacatttgattacggctacgaaccaacacaagagtcgcaatggaataatgaaaatccg
ggatggcatccatcatcgggcataaaagaactaacacccggaccagcaatggttccaccg
ccagcagctggtatgtcaggtccccctggtgtacccccgatgggtgtgcctcctcctcaa
atcggagggcccccaccgcaaatgcgtcagcatcctcccataatgcctggaatgcctcca
ccaaatatgggtatgggcccgccgccgcctggcatgggtatgatgatgggccccggcgga
ggaccaccaatgagaatgcctatgggacctccccgcatgatgggaccacatggaggtgga
ccaccaaatccaggacatatggatcgcgagcgtcatgatcgtgaccgtgaaagagagcgc
gactatgaacggaatgatcggcgtgagcgtgatagagatcgggagcgagatcgcgaccga
gagcgagagacagagcgcgagcgggaacgggaaagagaaagagaacgagaaagaccccgc
cgtgaacgttcacgtagtcgagataagtctagacggcgctcaaaatcacgtgagaaagaa
cgtgatcgtgagcgtgaaagagaacgtgatcgcgaccgagatggcgagcgagaacgagag
cgtgacagaagtgaaaaacttgacccggatcctgaacgtgcagtagatgaggatcgcgaa
cgaagaagacgtgaacgtgatcgggaacgcgagcgcgaaagatctcggcgagaacgttcg
cgtagtcgtgagaagacacgccgccgttcaaaatctcgtgaaaaagaccgagagcgcagt
agcaaaactgtcggtacatcctcttcgacgagtcgcagcgaaaagaaaaaatctcatcgc
aaagataaggaagaagaggagtga
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