KEGG   Rhagoletis zephyria (snowberry fruit fly): 108381100
Entry
108381100         CDS       T08513                                 
Name
(RefSeq) LOW QUALITY PROTEIN: transcriptional adapter 2A
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
rze  Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03020  RNA polymerase
rze03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rze00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    108381100
  09124 Replication and repair
   03420 Nucleotide excision repair
    108381100
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rze03021]
    108381100
   03400 DNA repair and recombination proteins [BR:rze03400]
    108381100
Transcription machinery [BR:rze03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     108381100
DNA repair and recombination proteins [BR:rze03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      108381100
SSDB
Motif
Pfam: TADA2A-like_3rd SWIRM Myb_DNA-binding Myb_DNA-bind_6 zf-C5HC2 HTH_Hrp3
Other DBs
NCBI-GeneID: 108381100
NCBI-ProteinID: XP_017492998
LinkDB
Position
Unknown
AA seq 501 aa
KNASSCQHGIIKVRPTLDTKYTTAYYHAEEFNKALELRNKSIHINNTDYMKAGVNNTEQC
STCKCDLYEPYIKCPDCERTLLCLQCFAQGRETATHLNTHSYIIIRDDIQVFAGAGRWTA
KDERILLRTLEKKGYGNWEAVEHALNSRHTAEECRQHYHNCYFGGIFERLLGLTHHKNAY
FPERMPYVVKMRSVDPPRSDEPGSMQFKMMAGYRCARGDFDTPYDNSAEDLLTTIMQNSF
AAISASDDDEPIDEISSAAYEELQLAVVRAYNNRLRERKRRYRIMRDHGLIMPNRTLGWI
SKYAEALGSESNCHRFLSFMQISKPIKYDMLVESLKYFSDVQKKIYRLYELRQNGVRTLE
GGALYFKMKKRRAQQQRDRLKDDTSRQLHDWRKLMPSPQMLVPNPFATPHAGSNPRKSXG
PMDIMGMPGYTRLTDDERKLCSVERIAPQSYIDYKNLLIAENMKMGHLRLADARRLIKID
VNKTRQIYDFLIENGHINRPT
NT seq 1506 nt   +upstreamnt  +downstreamnt
aaaaatgcctcgagctgtcaacacggcatcatcaaagttcgccctacattggatacgaaa
tatacaacagcttactatcatgctgaagagttcaacaaagcgctagagctacgcaacaaa
tccatccacataaataatactgattacatgaaagctggtgtaaataacacagagcaatgc
agcacttgcaagtgtgatttgtacgaaccgtacataaagtgtccggattgtgaacgtacg
ctattgtgtttgcaatgttttgcacaaggacgtgagacggcgacgcatctcaatacgcat
tcctacattattatacgcgacgatatacaagtatttgcgggcgctggtaggtggacagcg
aaagatgagcgtattttattgcgtacattagagaaaaaaggctatggcaattgggaggcc
gttgaacacgcactgaactctcggcacactgctgaggaatgtcgccaacattatcataac
tgctacttcggtggaatatttgagcgtttacttggtttgacgcaccacaaaaatgcgtac
ttccccgaacgcatgccgtatgttgtaaagatgcgttctgttgatccgccacgcagtgat
gagccgggctcaatgcaatttaaaatgatggcgggatatcgatgtgcgcgtggggacttc
gatactccatacgataactcagctgaagatttgctaacgacaatcatgcaaaatagcttt
gctgccatttctgcgagtgacgacgatgagccaattgacgaaataagcagtgctgcgtat
gaggaactgcaattagcagtagtccgtgcttataataatcgattgagagaacgtaaacgc
agatatcgaataatgcgtgaccacgggctgatcatgcccaatcgcactttgggttggatc
tcgaagtatgcagaggcgttgggctcggaatcgaattgccatcgtttcttgtcttttatg
cagatcagcaagccgattaaatacgacatgctggtagagtccctgaaatatttttcggat
gtgcaaaagaagatttatcgcttgtatgagctacgtcagaatggcgtgcgcacacttgaa
ggcggtgcattgtacttcaaaatgaagaaacggcgcgctcagcaacaacgcgatcgccta
aaagatgatacatcccgacaactgcacgattggcgtaagctaatgccaagccctcaaatg
ctcgtacccaatccgttcgcaacgccgcatgcaggttcaaaccccagaaaaagcnctggc
ccaatggacattatgggcatgcctgggtatacccgcctcaccgacgatgaacgaaaattg
tgcagcgtcgagcgtatagcaccacaatcatatatagattacaaaaacctcttaatagcg
gaaaatatgaaaatgggtcatttgcgtttggccgatgccaggcgtttgataaagattgat
gtcaacaaaactcggcaaatatatgattttctgatagaaaatggccatataaatagaccc
acgtga

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