Rhagoletis zephyria (snowberry fruit fly): 108381427
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Entry
108381427 CDS
T08513
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03030
DNA replication
rze03420
Nucleotide excision repair
rze03430
Mismatch repair
rze03440
Homologous recombination
rze03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108381427
03420 Nucleotide excision repair
108381427
03430 Mismatch repair
108381427
03440 Homologous recombination
108381427
03460 Fanconi anemia pathway
108381427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rze03000
]
108381427
03032 DNA replication proteins [BR:
rze03032
]
108381427
03400 DNA repair and recombination proteins [BR:
rze03400
]
108381427
Transcription factors [BR:
rze03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
108381427
DNA replication proteins [BR:
rze03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
108381427
DNA repair and recombination proteins [BR:
rze03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
108381427
MMR (mismatch excision repair)
108381427
DSBR (double strand breaks repair)
HR (homologous recombination)
108381427
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
tRNA_anti-codon
Rep-A_N
DUF223
PHD_Oberon
SHLD2_OB1
Motif
Other DBs
NCBI-GeneID:
108381427
NCBI-ProteinID:
XP_017493338
LinkDB
All DBs
Position
Unknown
AA seq
676 aa
AA seq
DB search
MAADLRLSKGVINAILEGRVKSADASDPAFQPPLMQLLGVRPMQQGRLRAVLYDGLTINQ
HCILMHDDAERLFAEGHLDKFTVIRVLDFTANAMPAKNMTVLIINKMDLVRDGKEINDKL
EGTDWAYLSQRSGCGAVAAFSPMKKEEPADSAYGGSSALVSRPPLIVTKSATSTTASSSP
STSKAGGGGAAAPGVFPTTNTLQHEQVAPINVISPFYTSWVIRVRVTSKTPLKTYNNARG
GGHVFSFDTVDQSGGELRITAFNAEADKWYELIERGRVYLISKGAVKPANKRYSSLKAEY
EVTLTGHSVIEPVDDQATGGIPLMRYNFKPLSEVEGMAAGTSIDVIGVVRAVGELESFVA
RKTGREVTKREVTIVDRSLYEARVTFWGGLAESFTANVGEVVALKSVLVGEFKGKTLGTI
GSTVVDVEPAELAEVGVLRHWYHGPARGSAEAFKSLSSVGGTRKLDNSHRFVGQLTAKLV
QENAANVANNPATSAAISANPYANPSIYSSVYGTISAISNRKEGTSHLYKSCANEAVPGG
CLKKVTDEAGDGTYYCAKCDRTTNTFKWRFMLSVAVADATGSAWITIFQENAEKLLGVTA
QQLADLFETCPEEYAAKINQLRFTALQLRLGSKMEEYNGETRVRSSLYGVVPSDPVERSR
RLLAMIPKMQQQLEVN
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggatctccgcctgagcaagggcgtcatcaatgcgatcctggaggggcgcgtc
aagtcggcggacgccagtgatccggcctttcagccgccgctgatgcagctgctcggcgtg
aggccaatgcagcaaggacgcctgcgggcggtcctctacgacggcctcaccatcaaccag
cactgcatcctcatgcacgacgacgcggagcgcctctttgccgagggccatctcgacaag
ttcacggtgatccgcgtgctggactttaccgccaacgccatgcccgcgaagaacatgacc
gtgctgattatcaacaagatggacctggtcagagatggcaaagagatcaatgataagctc
gagggcactgactgggcctatctgagtcaacgaagtggctgtggtgcagtggccgccttc
tctccgatgaagaaggaggagccggccgattccgcctacggcggctcttcagcgctcgtc
tcgcgcccgccgttgatcgtgaccaagtcagcgacctctacgacggcctcttccagccct
tcaacaagcaaagccggtggcggtggggcggcagccccaggcgtcttccccaccaccaac
acgctccagcacgagcaggtggccccgatcaacgtcatctcgcccttctacaccagctgg
gtgattcgcgtccgcgtcaccagcaagacgcccctcaaaacgtacaacaacgcccgcggc
ggcggccacgtcttcagcttcgacaccgtcgaccagagcggcggcgagctgcgcatcacc
gccttcaacgccgaggcggacaagtggtacgagctgattgagcgcggccgcgtctacctc
atctcgaagggcgccgtcaagccggcgaacaagcgctacagctcgctgaaggccgagtac
gaggtgacgctgaccggccacagcgtcatcgagccggtggacgaccaggcgacgggcggc
atccctctcatgcgctacaacttcaagccgctctcggaggtggagggcatggccgccggc
acgagcatcgacgtcattggcgtggtgcgcgccgtcggcgagttggagtcctttgtggcg
cgcaagaccggccgagaggtgaccaagcgcgaggtgaccatcgtcgaccgctccctctac
gaggcgcgcgtcaccttctggggcggcctcgcggagagcttcactgccaacgtcggcgag
gtggtggccctcaagtcggtcctggtgggcgagttcaaggggaagacgctgggcaccatt
ggctccaccgtggtggacgtggagccggcggagctggccgaggtgggcgtcctccgccac
tggtaccacgggccggcgcgcggctccgccgaggccttcaagagcctgagcagcgtgggc
ggcacgcgcaagctggacaacagccaccgctttgtggggcagctgacggcgaagctggtg
caggagaatgcggcgaacgtcgccaataacccggccacctccgccgccatctccgcgaac
ccctacgccaatccgagcatctacagctccgtctacgggacgatctctgcgatcagcaat
cggaaggagggcaccagccacctgtacaagagctgcgccaatgaggccgtccccggtggc
tgcctgaagaaggtgaccgacgaggcgggcgacggcacctactactgcgccaagtgcgac
cgcaccacgaacaccttcaagtggcgattcatgctcagcgtggcggtggcggacgccacc
ggcagcgcctggatcaccatcttccaggagaacgcggagaagctgctgggcgtcaccgcc
cagcagctggccgacctctttgagacctgcccggaggagtacgccgcgaagatcaaccag
ctccgcttcaccgccctccagctgcgactgggctcgaagatggaggagtacaatggggag
acgcgcgtgcgcagttcgctgtacggggtggtgcccagtgacccggtggagcgcagccgc
cgcctcctcgccatgattcccaagatgcagcagcagctggaggtgaactag
DBGET
integrated database retrieval system
