KEGG   Rhagoletis zephyria (snowberry fruit fly): 108382207
Entry
108382207         CDS       T08513                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
rze  Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rze00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108382207
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rze03041]
    108382207
Spliceosome [BR:rze03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    108382207
 Complex C
   U5 SnRNP specific factors
    108382207
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 EIF3I WDR55 Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_EML Beta-prop_SCAP WD40_RFWD3 WDR90_beta-prop_4th NBCH_WD40 Beta-prop_SPT8 ANAPC4_WD40 Beta-prop_RIG_2nd eIF2A Beta-prop_WDR19_1st Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_RIG_1st WD_LRWD1 Beta-prop_NWD2_C WD40_like Beta-prop_Nup120_160 Nbas_N Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 108382207
NCBI-ProteinID: XP_017494090
LinkDB
Position
Unknown
AA seq 256 aa
LNGGHKGAILDVQFSAQGDLIFSASTDKNVIIWDAGTCVRVKKLTGHQGIVNSCSTSRDA
NKALLCSASDDKTVRIWDTRKRGVVSTFKDDYQLTAITFNDAADQVIVGGIENVLKVYDM
RKNKLLYTMAGHFDTITGLALSPDGNLVLSNSMDNSLCIWDIRPFVQTNRNLKTLTGHQH
NFEKNLLRCSWSPDSRRVTAGSADRFVNIWDVYNKRILYKLPGHTGSVNEVVFHPKEPIV
LSCSSDRQLYMGEIEA
NT seq 771 nt   +upstreamnt  +downstreamnt
ttgaatggcggccacaaaggagcaattcttgatgtgcagttttcggcacaaggtgacttg
attttttctgcttcaactgacaagaatgtaatcatctgggacgcgggcacttgtgttcga
gtgaagaaacttactggacaccagggaatcgtcaactcatgttctacttctcgagacgca
aataaggcgctactttgcagcgcttctgacgataagacggtcagaatttgggacactaga
aagagaggcgtggtttcaacgttcaaagacgactaccaactaactgctattaccttcaac
gatgctgccgatcaggtgattgtcggtggaattgagaacgttctgaaggtgtacgatatg
cgaaagaacaagctgctgtacacgatggcaggccactttgacactataaccggccttgca
ctgtctccggacggaaatttagtgctctccaactcaatggacaactctttatgcatttgg
gacattagaccgtttgtgcagacaaaccggaacctcaaaacactgaccggtcaccagcac
aactttgagaagaacctccttcgatgctcctggtcaccggacagccgtcgcgtcacagca
ggcagcgccgaccgctttgtcaacatttgggacgtctacaacaagcgcatcctctacaaa
ctgcccggccacactggttcagttaatgaggttgtctttcatcccaaggagcctatcgtc
ttgtcctgctccagcgaccgacagctgtacatgggcgaaattgaagcctga

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