Candidatus Saccharimonas aalborgensis: L336_0995
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Entry
L336_0995 CDS
T02673
Symbol
rpoA
Name
(GenBank) RNA polymerase (alpha subunit)
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
saal
Candidatus Saccharimonas aalborgensis
Pathway
saal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
saal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L336_0995 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saal03021
]
L336_0995 (rpoA)
03400 DNA repair and recombination proteins [BR:
saal03400
]
L336_0995 (rpoA)
Enzymes [BR:
saal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L336_0995 (rpoA)
Transcription machinery [BR:
saal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L336_0995 (rpoA)
DNA repair and recombination proteins [BR:
saal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L336_0995 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
RNA_pol_L_2
RAD51D_N
SAM_KSR1
Motif
Other DBs
NCBI-ProteinID:
AGL62694
UniProt:
R4PNY9
LinkDB
All DBs
Position
complement(979405..980328)
Genome browser
AA seq
307 aa
AA seq
DB search
MSKVIHNPALARVTPSGDNTSSFVIEPLHAGYGDTLGNSIRRVLLSSIRGAAIVAFRIEG
VTHEFATIPGVKEDVVDIMLNLKGVKLKVETDDPVELRLEKKGSGPVVAGDIKTSADVEV
INPDHVICTIDDPKKSIVIDLVVEAGRGYYDMEASSKNRLHSDMIAIDAMFSPVTRVRFK
VEATRVGQETNLNRLEITIETDGSISPQAAFEEANAILVNQYTALAGSTTVESAPALGTQ
KEDDEGELNTPIEELGLSARTANALINNEIRTVHDLVTLSEQDLRDLKGFGSKALDEVKD
KLAELEL
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagttattcacaatccagcactcgctcgtgttacgccatctggcgacaatact
tctagttttgttatcgagccgctgcatgctggttacggcgatacgctaggcaatagcatt
cgccgcgtcttgctttcgagtatccgcggtgcagcaatcgttgcatttcgtatcgaaggc
gtcacccatgaatttgcgacgattcctggggtcaaagaagatgtcgtcgatatcatgctc
aacctcaaaggcgtcaagctgaaagttgagacagatgatcctgtcgaacttcgccttgag
aaaaaaggctcaggcccagttgtagctggtgacatcaagacgtctgcagatgttgaggtc
atcaatcccgatcatgttatctgcaccattgacgatcctaagaaatcgattgtcatcgat
cttgtcgtcgaagcaggccgtggctactacgacatggaagcatcgagcaaaaatcgcctc
cacagcgatatgattgcgattgatgccatgtttagcccggtaacacgcgttcgatttaag
gttgaggcgactcgtgttggacaagagacaaaccttaatcgactcgaaattacaattgag
actgatggaagcattagccctcaagctgccttcgaggaagcaaatgcgattctggttaac
caatacaccgcacttgccggtagcaccactgttgagtcagcaccagcacttggtacccaa
aaggaagatgacgagggtgagctcaatacgccaatcgaggaattgggcctcagcgctcgc
actgccaatgcacttatcaacaacgagattcgtactgtgcatgacctagtcactctcagt
gaacaagatttgcgtgatctcaagggctttggtagcaaagccctcgatgaagtcaaagat
aaattggcagaattggagctctaa
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