Candidatus Saccharimonas aalborgensis: L336_1032
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Entry
L336_1032 CDS
T02673
Name
(GenBank) putative DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
saal
Candidatus Saccharimonas aalborgensis
Pathway
saal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L336_1032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saal03019
]
L336_1032
Enzymes [BR:
saal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L336_1032
Messenger RNA biogenesis [BR:
saal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L336_1032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
Cas3-like_C_2
PseudoU_synth_2
Motif
Other DBs
NCBI-ProteinID:
AGL62731
UniProt:
R4PZP7
LinkDB
All DBs
Position
999906..1001273
Genome browser
AA seq
455 aa
AA seq
DB search
MRPRTSNSRQTSHYSPRFAGKKRTPTKRSTQEIHASRFINKAIAPVDDTPYAATHLFSDF
GLNPQTIATLGHIGYETPSPIQDRTIKPGLAGKDVIGLANTGTGKTAAFLLPIIDALATT
RTVQGALVLAPTRELAQQINDEFRRFSAGQKLYSALVVGGVNMSRQIREVQRGPHLIVGT
PGRINDLIDRNILRLASCTTFVLDEADRMCDMGFVRDIRKIESELPRKRQTFCFSATMTT
DVKAIVEEFMHDPVTVSVIKNETNDHIEQDVIHARDKAHKIELLLELLGKDGFDKVIVFC
DTKHFAQRLSDRLSKEGFTSEAIHGNKSQGQRDRALRAFKSGNVRILVATDVAARGLDIP
NVSHVINFDAPKQYEDYVHRIGRTGRAGQSGQALTFVSQPGISAPKSLTARHHERPNRSH
SVRTEPTQNTKPSHRRRLTGGAAAEDRLVRLIDTL
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgcgcccacgtacaagtaactcgagacaaacgtctcactattcacctcgctttgcgggg
aaaaaacgcactccgacaaaacgatcaacgcaggaaatccacgcgagtcgttttatcaat
aaggctatcgcccctgtcgatgacacgccgtacgccgctactcacttgtttagcgacttt
ggcttgaatcctcaaacgattgcaacgcttggccacatcgggtatgagacaccatcgccg
attcaagatcggaccatcaaacctggacttgctggcaaagatgtgattggtcttgcaaat
accggcaccggtaagactgccgcctttttgctgccgattatcgatgcactcgctaccaca
cgtacagtacagggcgctcttgtccttgctcccacgcgtgaactggcccagcaaataaac
gacgagttccgacgtttttctgcaggtcagaagctctactctgcacttgtcgtcggtggg
gttaatatgagccgacagatcagggaggttcagcgcgggccacaccttatcgttggcacg
ccgggtcgtatcaatgatctgatcgatcgaaacatcttacggcttgcgagctgcaccaca
tttgtgctcgacgaagcagatcgtatgtgtgatatgggatttgttcgtgatattcgcaag
atagagtcagaattgccacgcaagcgccagacattttgttttagcgcgacgatgacaact
gatgtcaaggcgatcgttgaagagtttatgcatgatcccgtcacggtctctgttatcaaa
aacgagaccaatgatcatatcgaacaagatgttattcatgctcgagacaaggctcacaag
atcgagctgctactcgaactgctgggtaaagatggtttcgataaggtaatcgtgttttgc
gacaccaaacactttgcacagcgactttcagatcgactatccaaggaagggtttacttca
gaagcaattcacggcaataaatcccagggtcagcgtgatcgagcattacgtgcgtttaag
tcaggcaacgtccgtatcttggtggcaacagatgttgctgcacgcggactcgatattccc
aatgtttcacatgtgattaattttgatgctccgaagcaatacgaggactatgtgcaccga
atcggtcgtacaggccgcgcggggcagtcaggacaagccctgacgtttgtttcacaaccg
gggatatctgccccaaaatcactgacagcacgccatcacgaacgacccaataggtctcac
tcggttcgtaccgaacccacccaaaacaccaaaccatctcaccgtcgccgtttgacggga
ggtgctgctgccgaagaccgacttgttcgactgatcgacacattgtag
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