KEGG   Sphingomonas sp. AAP5: E2E30_03605
Entry
E2E30_03605       CDS       T10507                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
saap  Sphingomonas sp. AAP5
Pathway
saap03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:saap00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    E2E30_03605 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:saap03400]
    E2E30_03605 (ligD)
Enzymes [BR:saap01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     E2E30_03605 (ligD)
DNA repair and recombination proteins [BR:saap03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     E2E30_03605 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QBM74945
UniProt: A0A4P6X9J2
LinkDB
Position
783384..785876
AA seq 830 aa
MSTDPLAKYNAKRDFAKTAEPAGTLAPGHGNRFIVQKHDASRLHWDFRLEVDGVLKSWAV
TRGPSIDPDQKRLAVRTEDHPLSYADFEGIIPAGEYGGGTVMLWDSGTWAPIAGKSVKDI
EQGHLHFVLEGERMKGEWMLIRLKPRGKEKGENWLLRKVGDAEAGGTDTLVETGLTSVTT
GRTMAEIAEGKAPTKQSTPSPPRTRGSRSSSAAGQKRDPRVRGDDGKMPVFQEPQLCTLV
DAVPSGNQWLHEVKYDGYRALIAVAKGKAKVFTRSGLDWTDKFQAIADAVAKLPVETALL
DGEIVAFKDGKPDFSTLKNAISSGGEMTFFAFDLLQLDGEDLTGLANTARKERLAPLIDG
EDPRVQYSQHIIGQGEQLFETMCREGYEGVVSKRADAPYRGKRTQAWLKIKCTQRQEFVI
VGWTTSAKPRGFASLLLGLNGPDGLIYAGKVGTGFSTDLMMELRERLEKIERKTPTVKAP
PAAVRGAHWVKPQLVAEVAYAETTPDGVLRHSSFLGLREDKAASEVVAETPVAVDAPESH
IPETHIKISNRDRVIFPESNVTKGELADYYAQVSSIMLPFAGSRPISLVRCPQGRAKACF
FQKHDAGSFKGDHVHKVAIPEKDGSSEDYLYVDDADGLVACVQMGTIEFHGWGSSVGSLE
QPDRMVFDLDPDEELGFDVVKKAAADLKEHLAELGLVSFAMLSGGKGVHVVVPLTPQAEW
PAVKDFAERFARALGAAEPDRFLATMSKAKRKGRIFIDWLRNQRGATAVLPYVARARAGA
PVAAPVSWTELRDIDAASRWGVRDAAALIARAGSRDLAGWGIADQVLPDL
NT seq 2493 nt   +upstreamnt  +downstreamnt
atgagcaccgacccgctcgccaaatacaatgccaagcgcgacttcgcgaagaccgccgag
cccgccggcacgctcgcgcccggccatggcaaccgcttcatcgtccagaagcacgacgcc
tcgcgcctccactgggacttccgcctcgaggtcgacggcgtgctcaagagctgggcggtc
acgcgcggcccgagcatcgaccccgaccagaagcgcctcgcggtccgcaccgaggaccat
ccgctgtcctatgccgatttcgaaggcatcattccggcgggcgaatatggcggcggcacg
gtgatgttgtgggacagcggcacctgggcgccgatcgcgggcaagagcgtgaaggatatc
gagcagggccatctccacttcgtgctcgagggcgagcggatgaagggcgagtggatgctg
atccggctgaaaccgcgcggcaaggagaagggcgagaactggctgctgcgcaaggtcggc
gacgccgaggcgggcgggaccgatacgctggtcgagaccgggctgacgagtgtgacgacc
gggcgcacgatggcggagatcgcggaggggaaggctccgacgaaacagtccaccccgtca
cccccgcgaacgcgggggtcgcgctcgtcttcggccgcgggccagaagcgggatccccgc
gttcgcggggatgacggaaagatgccggtgtttcaggagccgcagctttgcacgctggtg
gatgcggtgccgtcggggaaccagtggctgcacgaggtgaagtatgacggctaccgcgcg
ctgatcgcggtcgccaagggcaaggccaaggtcttcacccgctcgggcctcgactggacc
gacaaattccaggccatcgccgatgccgtcgccaagctccccgtggaaaccgccttgctc
gacggcgaaatcgtcgcgttcaaggacggcaagcccgatttctcgacgctcaaaaacgcc
atttcgagcggcggcgagatgaccttcttcgccttcgacctgctccagctcgacggcgag
gacctgaccggcctcgccaacaccgcgcgaaaggaacggctcgcgccgctgatcgacggc
gaggacccgcgcgtccaatattcgcagcatatcatcggacagggcgagcaactgttcgag
acgatgtgccgcgaaggctatgagggcgtcgtgtcgaagcgcgccgatgcgccgtatcgc
ggcaagcggacgcaggcgtggctcaagatcaagtgcacgcagcgccaggaattcgtcatc
gtcggctggacgacgagcgcgaaaccgcgcgggtttgcttcgctgctgctcggcctcaac
gggcccgacgggctgatctatgccggcaaggtcgggaccgggttcagcaccgacctgatg
atggaactgcgcgaacggctcgaaaagatcgagcgcaagacaccgacggtgaaggctccc
ccagcggcggtccgcggggcgcattgggtcaaaccgcaactcgtcgccgaagtcgcctat
gccgagaccacgcccgacggcgtgctgcgccattcgagcttcctgggtttgcgcgaggac
aaggcggcgagcgaggtcgtcgccgagacgccggtggcggtcgacgcgcccgaaagccac
atccccgaaacccacatcaagatcagcaatcgcgaccgcgtgatctttcccgaatcgaac
gtcaccaagggcgagctcgccgattattacgcacaggtctccagcatcatgctgcccttc
gccggcagccgcccgatcagcctggtgcgctgcccgcaaggccgcgcaaaggcctgcttc
ttccagaagcacgacgcgggcagctttaagggcgaccacgtccacaaggtcgcgatcccg
gagaaggacgggtcgagcgaggattatctctacgtcgacgacgcggacgggctcgtcgcc
tgcgtccagatggggacgatcgaatttcacggctggggctcgtcggtcggcagcctcgaa
cagcccgatcggatggtgttcgatctcgaccccgacgaagagctcggcttcgacgtggtc
aaaaaggccgcggcggacctcaaggaacatctcgccgaactcggcctcgtcagcttcgcg
atgctgtcgggcgggaagggcgtgcatgtcgtcgtgccgctcacgccgcaagccgagtgg
cctgcggtcaaggatttcgccgaacgcttcgcccgcgcgctcggcgcggccgagcccgat
cgcttcctcgcgacgatgtcgaaggccaagcgcaaggggcggatcttcatcgactggctg
cgcaaccagcgcggcgcgaccgccgtgctgccctatgtcgcgcgcgcccgcgccggcgcg
cccgtcgcggcacccgtgtcgtggaccgaattgcgcgatatcgacgccgcgagccgctgg
ggcgtgcgcgatgccgccgcattgatcgcgcgcgccggatcgcgcgatctcgcgggatgg
ggcattgcggaccaagttctgcccgatctgtaa

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