Sphingomonas sp. AAP5: E2E30_08235
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Entry
E2E30_08235 CDS
T10507
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
saap Sphingomonas sp. AAP5
Pathway
saap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
saap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E2E30_08235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saap03400
]
E2E30_08235
Enzymes [BR:
saap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E2E30_08235
DNA repair and recombination proteins [BR:
saap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E2E30_08235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
SecA_DEAD
AAA_30
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QBM75760
UniProt:
A0A4V1ACN8
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All DBs
Position
1788963..1792145
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AA seq
1060 aa
AA seq
DB search
MLLADANPPAPEARQTERDAAIGIVATKLAQAAATHDILYIATDEQRAEAVAAALTCAAP
DLLVVHSPSSDALPGDTAPASPTNVGRRIAALRRLRVALTDQQRVAFVTTAEAAAAAYPP
PPAFDDAPPTLRVGDHVDMTALAEMLGTIGYVADDRVDEPGEMAMRGQVVDLYPADAVAP
VRIEIVDGAISAIRLYDPISQLGTEPIESIQVGRVSEPALGADWESLFDHAPDAVIAIDP
AGTARRDRYVGLATSAAKARGLDTLPIVDRKRWDKALKGRTIIAVAAADEQPVPRFVERK
AAGRAFSRFAKAALAQGDRLVLLGAARDIRFLAPRLAKAQGIAFTKISHWAEVATLEPGS
AAMLDMPIDHGWQAPGLSVVAAADLLGSRVQATHAPSDAAAALRGDMGDIRIGDVVVHED
FGIGLVAGIEPVGVDADGGDAIVLEYANDGRRLVPVADADRIWRYGADQDAVALDTLDGS
SWEKRRGAIDAAVAESARGLTALAAERDRKTAAVLEPDVDAYERFAAEFAFTETPDQARA
IAATRVDLAAGKPMDRLVVGDVGYGKTEVALRAAAIAALAGKQVVVAAPTTVLVRQHLEL
FAKRFAATGLAVAGLSRLSSPAEKKAVKAGLADGSIAIVIGTGAVAAKGVAYRDLGLVVI
DEEQRFGAADKAKLRGLNTDGHVLTLTATPIPRTLQAALIGLQQVSVIATPPARRQPIRT
SVGSFDPVTVRTALLRERERGGQSFVVVSRIEDIAPMAERLAALVPGLTIRQAHGKLPAA
EIDTAMVSFANGDGDVLLATNIVEAGLDVPRANTMIVWRADRFGLSQLHQLRGRVGRGGR
RGQILLLTDPESKVAESTLKRLRTLEALDKLGAGFAISARDLDMRGAGDLLGDAQAGHMK
LIGVDLYHYLLESALRTARGEHVERWTPELHLGIAGNLPLAWIPEDDARVALYGRLSRLS
EMAALDAFEAELEDRFGSLPPEAHALLAVGRLRVLAFGARIARIDAGPAAIALTPRHDFA
GDAAGLEVKGDRLLLRSAQDDAMARLGVIETLLEGLSSDT
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
ttgctgctcgctgacgccaatccgccagcgcctgaagcgcgccagaccgagcgtgatgcc
gcgatcgggatcgtcgcgaccaagctcgcgcaagcggccgcgacgcacgacatcctctac
atcgcaaccgacgaacaacgcgccgaggccgtggccgcagcccttacctgcgccgcgccc
gatctgctggtggtgcacagtccgtcgagcgacgctctgccaggcgacaccgcgcccgcc
tcccccaccaatgtcggccgccgcatcgccgcgttgcgccggttgcgcgtcgcgctgacc
gaccagcagcgcgtcgccttcgtcaccaccgccgaggcggctgccgcggcctaccccccg
cccccggcgttcgacgatgccccacctacgctgcgggtcggcgaccatgtcgacatgacg
gcgcttgccgaaatgctcggcacgatcggctatgtcgccgacgaccgggtcgacgagccg
ggcgaaatggcgatgcgcggacaagtcgtcgacctgtaccccgccgacgcggtcgccccc
gtacgcatcgagatcgtcgacggcgcgatcagcgcgatccggctctatgatccgatttcg
cagctcggcaccgagccgatcgagtcgatccaggttggccgcgtgtccgaaccagcgctt
ggcgccgactgggagtcgctgttcgaccatgcgcccgacgccgtgatcgcgatcgacccc
gcgggaaccgcgcggcgcgatcgctatgtcggccttgccaccagcgccgccaaggcgcgc
ggtctcgacacgctgccgatcgtcgatcggaagcgctgggacaaggcgctgaaagggcgc
acgatcatcgcggtcgccgccgccgacgaacagcccgtcccacgcttcgtcgagcgcaag
gcggcgggtcgcgctttctcgcgcttcgccaaggcggcgctggcgcagggcgaccggctc
gtcctgctcggcgcggcgcgcgacatccgtttcctcgcgccgcgcctcgccaaggcgcag
ggcatcgcctttaccaagatcagccattgggccgaggtcgcgacgctcgaaccgggcagc
gcggcgatgctcgacatgccgatcgaccatggctggcaagcgcccggactcagcgtcgtc
gccgcagccgatctgctcggcagccgcgtccaggcgacgcatgcgccgtcggatgccgcg
gcggcgctgcgcggcgacatgggcgacatccgcatcggcgatgtcgtggtccacgaggat
ttcgggatcgggctcgtcgcagggatcgagcccgtcggggtcgatgccgatggcggcgac
gcgatcgtcctcgaatatgccaatgacggccggcggctggtgccggtcgcggatgccgac
cgcatctggcgctatggcgccgaccaggacgcggtcgcgctcgacacgctcgacgggtcg
agctgggagaaacgccgcggcgcgatcgacgccgcggtcgccgagagtgcgcgcgggctg
accgcgctcgccgccgaacgcgatcgcaaaaccgccgcggtgctcgagcccgacgtcgac
gcctatgagcgtttcgccgccgaattcgccttcaccgaaacccccgaccaggcgcgcgcg
atcgccgcgacgcgggtcgatctggcggcggggaagccgatggatcggctcgtcgtcggc
gatgtcggctatggcaagaccgaggtcgcgctccgcgccgccgcgatcgcggcactggcg
ggcaagcaagtcgtcgtcgccgcgccgacgacggtgctggtgcgacagcatctcgaactg
ttcgccaagcgcttcgccgcgaccgggctcgcggtggcgggcctgtcgcggctgtcgagc
ccggccgagaaaaaggcggtcaaggccggcctcgccgacggatcgatcgcgatcgtgatc
ggcactggtgcggtggctgcgaagggcgtcgcctatcgcgaccttggcctcgtcgtgatc
gacgaggaacagcgcttcggcgcggccgacaaggccaagctgcgcgggcttaacaccgat
ggccatgtgctgacgctgaccgcgacgccgatcccgcgcaccttgcaggccgcgctgatc
gggctgcaacaggtctcggtcatcgccacgccccccgcgcggcgccagccgatccgcacc
agcgtcggcagcttcgatcccgtcacggtccgcaccgcgttgctgcgcgaacgcgaacgc
ggcggacagagcttcgtcgtcgtctcgcggatcgaggatatcgcgccgatggccgaacgg
ctcgccgcgctcgttcccggcctcacgatccggcaagcgcacggcaagctgcccgccgcc
gagatcgacacagcaatggtcagctttgcgaacggcgatggtgacgtgctgctcgcgacc
aacatcgtcgaggccgggctcgacgtaccgcgcgccaacacgatgatcgtctggcgcgcc
gaccgcttcggcctgtcgcagctccaccagctgcgcggacgcgtcgggcgcggcgggcgg
cgcgggcagatcctgctgctcaccgatcccgagagcaaagtcgccgaatccacactcaag
cggctgcggacgctcgaggcgctcgacaagcttggcgccggcttcgcgatcagcgcgcgc
gatctcgacatgcgcggggcgggcgatttgctcggcgatgcgcaggccgggcacatgaag
ctgatcggcgtcgatctgtaccattacctgctcgaatcggcgctgcgcaccgcgcgcggc
gaacatgtcgagcgctggacgcccgagcttcatctcggcatcgcgggcaacctcccgttg
gcctggatccccgaggacgatgcccgcgtcgcgctttacggtcggctgtcgcggctgagc
gagatggccgcgctcgacgcgttcgaggccgagctcgaagatcgcttcgggagtttgcca
cccgaggcgcacgccttgctggcggtcgggcgtttgcgtgtgctcgcgttcggtgcgcgg
atcgcgcggatcgacgccggccccgcggcgatcgcgctgacgccgcggcacgatttcgcc
ggcgacgccgcggggctcgaggtgaagggcgaccggctgcttctccgcagcgcgcaggac
gacgcgatggcgcggctcggcgtgatcgagacgctgctcgaaggactgtcgagcgacact
tga
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