Sphingomonas sp. AAP5: E2E30_15915
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Entry
E2E30_15915 CDS
T10507
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
saap Sphingomonas sp. AAP5
Brite
KEGG Orthology (KO) [BR:
saap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saap03032
]
E2E30_15915 (topA)
03400 DNA repair and recombination proteins [BR:
saap03400
]
E2E30_15915 (topA)
Enzymes [BR:
saap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
E2E30_15915 (topA)
DNA replication proteins [BR:
saap03032
]
Prokaryotic type
DNA Topoisomerases
E2E30_15915 (topA)
DNA repair and recombination proteins [BR:
saap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
E2E30_15915 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
HC2
Extensin_1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QBM77090
LinkDB
All DBs
Position
complement(3439145..3441784)
Genome browser
AA seq
879 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGSDYRVLASYGHVRDLPPKDGSVNPDEGFAMEWENYADKTK
QLKAITDLAKTADRLILATDPDREGEAISWHVQEVLRNRKALPKDVQRVTFNAITKATVT
EAMKHPRELDTDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLIVSRE
REIEAFRAQEYWSVVADMEQDGTPFQARLVQFEGKKLDRLSIGEEGTAMRAKAAVESGKF
TVQTVEVKPATRNPPPPFTTSTLQQEASRKLGFSADHTMRIAQGLYEDGAITYMRTDGVQ
MDSSAISAARLAVANRYDASYVPDKPRVYQTKAKNAQEAHEAIRPTDFGKDKAGGGDHAR
LYDLIFKRALASQMASARMERTTVEMLDGTGQTGLRATGQVVLFPGYLALYEEGSDDTQD
EDARRLPRLREGDAPAKKGVSAEQHFTQPPPRFSEASLVKRLEELGIGRPSTYASIIKTL
KDREYVRVEKNRFFAEESGRLVTAFLERFFEKYVSYDFTSGLEDELDEVSGGRAEWQAVL
EAFWRDFKPRTTEVMEQKPSEVTAELDKFLEPYLFPAQADGSDPRLCPHCGQGHLALRGG
KFGAFVACSNYPDCKYTRRFGQPGAAGEDAGPETLGEDPETGLPVERKSGRFGPYIQIGE
GETRKMASIPKDIGELDLEWALKLLSLPRTVGTHPETGEPITAAIGRYGPYLKHAGKYAR
LTSTEDVFETGMNAAVVKLAEAAAGGGRQQRGAQAPLKVLGLHPRSEAEIKLMEGRYGAY
VTDGTTNATLPKSIEKDALTLEEAAQLIDARAAAAPPAKGKKKPAAKKAPAKKAAAKKPA
AETAAAGEPAVKKAPAKKPAAKKPAAKKAPAKKVAAAAE
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttgtcatcgtagaatcgcccgccaaggcgaagaccatcgagaaatatctcggt
tctgactatcgcgtgctcgcaagctacggccatgtccgcgatctgccgcccaaggacgga
tcggtgaaccccgatgagggcttcgcgatggaatgggagaattacgccgacaagaccaag
cagctgaaagcgatcaccgatctcgccaagaccgccgaccgcctgattctcgcgaccgat
cccgatcgcgaaggcgaggcgatttcgtggcacgtccaggaagtgctgcgcaatcgcaag
gcactgcccaaggacgtccagcgcgtcaccttcaacgcgatcaccaaggcgacggtgacc
gaggcgatgaagcatccgcgcgagctcgataccgatctgatcgacgcgtatcgcgcgcgc
cgggcgctcgattatctcgtcggcttcacgctttcgccggtgctgtggcgcaagctgccc
ggcgccaagtcggccggccgtgtgcaatcggtcgcactgcgcctgatcgtcagccgcgag
cgcgagatcgaagccttccgcgcgcaggaatattggtcggtcgtggccgacatggagcag
gacggcaccccgttccaggcgcggctcgtccagttcgagggcaagaagctcgaccgcctg
tcgatcggcgaagagggcaccgcgatgcgcgccaaggccgcggtcgaatccggtaagttc
accgtgcagacggtcgaagtgaagcccgcgacgcgcaacccgccgccccccttcaccacc
tcgacgctccagcaggaagcctcgcgcaagctcggcttctcggccgatcacacgatgcgg
atcgcgcaagggctctacgaggacggcgcgatcacctatatgcgcaccgacggcgtgcag
atggattcgagcgcgatctccgcagcgcgtctcgccgtcgccaaccgctatgatgcgagc
tacgtcccagacaagccgcgcgtctaccagaccaaggcgaagaacgcgcaggaagcgcac
gaggcgatccgcccgaccgacttcggcaaggacaaggcgggtggtggcgatcacgcccgg
ctctacgacctgatcttcaagcgcgcgctcgccagccagatggcgtcggcgcggatggag
cgcaccacggtcgagatgctcgacggcaccggccagacgggcctgcgcgcgaccggccag
gtcgtgctcttccccggctatctcgcgctttacgaagagggctccgacgacacgcaggac
gaggacgcgcgccgccttccgcggctgcgcgagggcgacgcccccgccaagaagggcgtc
agcgccgagcagcacttcacccagccaccaccgcgcttctccgaagcgtcgctggtcaag
cgcctcgaagagctcggcatcggccgcccatcgacctatgcctcgatcatcaagacgctg
aaggaccgcgaatacgtccgcgtcgagaagaaccgcttcttcgccgaggaatcggggcgc
ctcgtgacggcgttcctcgaacgcttcttcgagaaatatgtgagctacgatttcacctcg
ggcctcgaggacgagctcgacgaagtctcgggtggccgcgccgaatggcaggcggtgctc
gaggcgttctggcgcgatttcaagccgcgcacgaccgaggtgatggagcagaagccgtcc
gaagtgaccgccgagctcgacaagttcctcgagccctatctcttcccggcgcaggccgat
ggcagcgatccgcggctgtgcccgcattgcggccagggacatcttgctttgcgcggcggc
aagttcggcgcgttcgtggcgtgctcgaactatcccgactgcaaatatacccgccgcttc
ggacagccgggtgcggccggcgaggatgccggacccgaaacgctcggcgaggatcccgag
accggcctgccggtcgagcgcaaatcggggcggttcgggccgtatatccagatcggcgag
ggcgagacgcgcaagatggcgtcgatcccgaaggatattggcgagctcgatctcgaatgg
gcgctgaagctgctgtcgctgccccgcaccgtcggcacgcatcccgagaccggcgagccg
atcaccgcggcgatcggccgttatggtccgtatctgaagcatgccggcaaatatgcgcgg
ctgacatcgaccgaggacgtgttcgaaacgggcatgaacgccgcggtcgtcaagctggcc
gaagctgcagcgggtggtgggcggcaacagcgcggcgcgcaggccccgctgaaagtgctc
gggctgcatccgcgcagcgaggccgagatcaagctgatggaggggcgctacggcgcctac
gtcaccgacggcacgaccaacgcgacgctgcccaagtcgatcgagaaggatgctctgacg
ctcgaggaagcggcgcagctgatcgacgcacgcgcggcggcggcaccgccagccaagggc
aagaagaagccagcagcgaagaaggcgcctgccaagaaagcggcagccaagaagcctgcg
gccgaaacagccgcggcaggcgagcccgccgtcaagaaggcacccgcgaagaagccggcg
gcgaaaaagcccgcggcgaagaaagcccctgccaagaaagtcgcggcagcggcggagtga
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