Staphylococcus aureus RF122: SAB0670
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Entry
SAB0670 CDS
T00303
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sab
Staphylococcus aureus RF122
Pathway
sab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAB0670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sab03019
]
SAB0670
03400 DNA repair and recombination proteins [BR:
sab03400
]
SAB0670
Enzymes [BR:
sab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAB0670
Messenger RNA biogenesis [BR:
sab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SAB0670
DNA repair and recombination proteins [BR:
sab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SAB0670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
GH123_cat
DUF1033
Motif
Other DBs
NCBI-ProteinID:
CAI80358
LinkDB
All DBs
Position
735592..737373
Genome browser
AA seq
593 aa
AA seq
DB search
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVI
SPLISLMKDQVGQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYF
LNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDFTIIALTATATVEVQQ
DIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHDEDAGIIYCSTRKQVE
ELQEALESQKIESDIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIH
YNMPGDLESYYQEAGRAGRDGLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLT
KMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDKSYNMTQEAKMIISCIARMKQ
QESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEI
LMCDTSIKKLLSNEVEVFTTPFRQKATGKVFINTVEGGDRVLFSQLVEVRKRLSDKLTIA
PVSIFSDYTLEEFAKRKPASKQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaacaaacattatcgcattactttgggtatgaaacgtttcgaccaggacaagaa
gaaattattagcaaagtattagaccatcgtaatgtgcttggtgtcttaccaactggtgga
ggtaagtctatatgctatcaagtaccaggtttattgttaggtggtacaacaattgtaata
agtccacttatatcattaatgaaagatcaagtgggtcagttaaaagcgatgggaattcag
gctgcttttttaaatagtagtttgactcaaaaagagcaacaacgtattgaaaaagcatta
tcaaatggagaaattcaatttttgtatgttgcaccagaacgatttgaaaaccgatatttt
ttaaatatgcttcagcgtataaagattcacttagtcgcgtttgatgaagcgcattgtata
tctaaatgggggcatgatttcagaccgagttatcaaaacgtcatttctaaagtatttacg
ttacctcaagattttacaataatagcgttgacagcaactgccacggttgaagtacagcaa
gatattagagaaaagttaaatatcgctcaaactgatcaaattaaaacgagtactaagcgt
agaaacttaatttttaaagtaaatcctacttatcaacgtcaaaaatttatattggattat
attaaaacacacgatgaagatgcaggtattatttattgttctacacgtaagcaagttgaa
gagcttcaagaagccttagaaagccagaaaattgaaagtgatatatatcatgcaggtttg
agcaataaagaaagagaagaagcgcagaatgatttcttatttgatcgtgttaaagtagtc
gttgctacaaatgcttttggtatgggtattgataaatccaatgtacgttttgttattcat
tataatatgcctggagatttagaatcttattatcaagaagcgggtcgtgcaggtcgtgat
gggttgaaaagtgaatgtattttgttatttagtgaacgcgatatcaatttacacgagtat
tttataacagtctctcaagctgatgatgactataaagataaaatgggtgaaaagttaact
aaaatgattcaatatacaaaaacaaaaaaatgtttagaagcaacaattgtccattatttt
gaaccgaatgaaaaattagaagaatgtgaacaatgtagtaattgtgttcaacaagataaa
tcatataatatgacacaagaagctaagatgattattagttgcatcgctcgtatgaaacaa
caagagagttatagtgttatcattcaagtgctaagaggagagtcaacagattatattaag
tataaaggttatgatcaaatttcaacccatggtttaatgaaaggttacacaacatcagaa
ttaagtcacttaatagatgaattaagattcaaagggttcttaaatgaaaatgatgaaata
ttaatgtgtgatacttcaattaaaaaattactcagtaatgaagtagaagtattcacaaca
ccatttaggcaaaaagcgactggaaaagtatttattaatacggttgaagggggtgaccga
gtattattcagtcagttggtagaagttcgtaaaaggttaagtgacaaattaacgatagca
cctgtaagtatattttctgattacacattggaggaatttgctaaacgtaagcctgcttcg
aaacaagatatgattaatattgatggcgtaggtagttacaaattaaaacattattgtcca
gcatttttagaaacgattcaaaattataaagccaaagtatag
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