Sphingomonas abietis: PBT88_05505
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Entry
PBT88_05505 CDS
T09690
Symbol
mutM
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sabi
Sphingomonas abietis
Pathway
sabi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sabi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PBT88_05505 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sabi03400
]
PBT88_05505 (mutM)
Enzymes [BR:
sabi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PBT88_05505 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PBT88_05505 (mutM)
DNA repair and recombination proteins [BR:
sabi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PBT88_05505 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
Motif
Other DBs
NCBI-ProteinID:
WBO23585
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All DBs
Position
1139793..1140605
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AA seq
270 aa
AA seq
DB search
MPELPEVETTVRGLESVLDGQVLTLVETRRADLRRAFPPDLRQRLTGARVTGLGRRAKYG
LVHTDRGDTMVFHLGMSGRWRVDPDALGTHDHLVLETEEGRRLSLADPRRFGSVDLLETE
RLAAWPAFAALGPEPLGDDFHAAQLAAALHGRIAPIKAMLLDQRIVAGLGNIYVCEALNI
ARIPPTRPAGKVSRPKLVALVEAVRAVLTEAIAAGGSTLRDYARPDGELGYFSKQFRVYG
REGEACPCGGVVERRIDSGRSTFHCRACQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagcttcccgaagtcgaaaccaccgtgcgtgggctggagagcgtgctcgacggc
caggtgctcacccttgtggagacgcgccgtgccgatctgcgccgcgccttcccgcccgat
ctgcgccagcggctgaccggcgcgcgggtgacggggctggggcggcgggccaaatatggc
ctcgtccacaccgatcgcggcgacaccatggtgttccatctcggcatgtcgggccgctgg
cgggtcgaccccgacgcgctgggcacgcacgaccatctcgtgctggagaccgaggagggc
aggcggctgtcgctggccgatccgcgccgcttcggttcggtcgacctgctcgagaccgag
cggctggccgcatggccggccttcgccgcgctcgggccggagccgttgggcgacgatttc
cacgccgcgcaactggcggcggcgctccacggccggatcgcgccgatcaaggcgatgctg
ctcgaccagcggatcgtggcgggactcggcaacatctatgtgtgcgaggcgctcaacatc
gcgcgaatcccgccaactaggccggcgggcaaggtctccaggccgaagctggtcgcgctg
gtcgaggcggtgcgcgcggtgctgaccgaggcgatcgccgccggcggatcgacgctgcgc
gattatgcccggcccgacggcgaactcggctatttctccaagcagttccgcgtctatggc
cgcgaaggcgaggcctgcccgtgcggcggcgtggtcgaacggcggatcgattccggccga
tccacctttcattgccgcgcctgccagcgttga
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