Sphingomonas abietis: PBT88_05650
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Entry
PBT88_05650 CDS
T09690
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sabi
Sphingomonas abietis
Pathway
sabi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sabi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PBT88_05650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sabi03019
]
PBT88_05650
Enzymes [BR:
sabi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PBT88_05650
Messenger RNA biogenesis [BR:
sabi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PBT88_05650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
WBO24571
UniProt:
A0ABY7NVV7
LinkDB
All DBs
Position
1163411..1165012
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AA seq
533 aa
AA seq
DB search
MEDIPLTQFSDLGLAAPIQQALAAEGYTTPTPIQAQAIPKLMEGHDLLGIAQTGTGKTAA
FGLPALHHLHTHAKPRPAKGCRMLILAPTRELASQIAESMNTYGKGLRLSAITVFGGVPI
NRQIRQLQAGVDILVATPGRLLDLIDQRALTLKDVEIFVLDEADQMLDLGFIHALKRIVP
LLPKKRQSLFFSATMPKTIGELADKFLTNPVKVSVAPVSSTAERVDQYMTYVNQGEKQAL
LTLKLREYEIGRALVFSRTKHGADRIVRHLAAAGLSAGAIHGNKSQPQRERTLLDFRAGK
VPILVATDIAARGIDVDGVTHVFNFDIPDVAEQYVHRIGRTARAGASGMALAFVSPEERG
NMRDVEKLTRVKPTELPLPENFVTEQKRLPLPAAGSRDDRERDALGARGRNDGRGGGRGR
PQHGQVHRGGTNRDTSRDAAPRGPVGNPLTRPEGGRGHSGNARPGGWSPVAGGDRPERAE
RGDRVVRSQGDRPQQPRGDRPQGARPAGGRPTGGRPGGGNFRGGRPGGARREG
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atggaagacatccctttgacccagttttcagacctcggtcttgccgccccgatccagcag
gcgctcgccgccgagggctataccacgccgacgccgatccaggcgcaggccatccccaag
ctgatggaaggccatgaccttctcggcatcgcgcagaccggcaccggcaagaccgccgcc
ttcggcctgcccgcgctccaccatctccacacccacgccaagccgcgccccgccaagggc
tgccggatgctgatcctcgcgccgacccgcgagctggccagccagatcgccgagagcatg
aacacctatggcaagggcctgcgcctgtccgccatcaccgtgttcggcggcgtgccgatc
aaccgccagatccgccagctccaggccggtgtcgacatcctcgtcgccacgccgggccgc
ctgctcgacctgatcgaccagcgcgcgctgaccttgaaggacgtcgagatcttcgtgctc
gacgaggcggaccagatgctcgacctcggcttcatccatgccctgaagcgcatcgtgccg
ctgctgccgaagaagcgccagtcgctgttcttctcggcgacgatgcccaagacgatcggc
gaactggccgacaagttcctgaccaacccggtcaaggtctcggtcgcgccggtttcgtcg
accgccgagcgcgtcgatcagtatatgacctatgtgaaccagggcgagaagcaggcgctg
ctcaccctcaagctgcgcgaatatgagatcggccgcgcgctggtgttcagccgcaccaag
catggcgccgatcgcatcgtccgccatcttgccgccgcgggcctgtcggccggcgcgatc
catggcaacaagagccagccgcagcgcgagcgcaccctgctggacttccgtgcgggcaag
gtgccgatcctggtcgccaccgacatcgccgcgcgtggcatcgacgtcgacggcgtcacc
cacgtcttcaacttcgacatccccgatgtcgccgagcaatatgtccaccgcatcggccgc
accgcgcgcgccggcgcgtcgggcatggcgctggcgttcgtctcgccggaagagcgcggc
aacatgcgcgacgtcgagaagctgacccgcgtcaagccgaccgagctgccgctgccggag
aatttcgtcaccgagcagaagcgcctgccgctgcccgccgccggttcgcgcgacgatcgc
gagcgcgatgcgctgggcgcgcgtggccgcaatgacggccggggcggcggtcgtggccgt
ccgcagcatggccaggtccatcgcggcggcaccaaccgcgacacgtcgcgcgatgccgcg
ccgcgtggcccggtcggcaatccgctgacacgccccgagggcggccgcggccatagcggc
aatgcccgtcccggcggctggagcccggtcgccggcggtgatcgtccggagcgcgccgag
cggggcgatcgcgtcgttcgttcgcagggtgatcggccccagcagccgcgcggcgatcgc
ccgcagggtgcgcgtccggccggtggtcgcccgacgggtggccgtcccggtggcggcaac
ttccgtggtggccgtccgggtggcgcgcgccgcgagggctga
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