Sphingomonas abietis: PBT88_09245
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Entry
PBT88_09245 CDS
T09690
Name
(GenBank) DEAD/DEAH box helicase
Organism
sabi
Sphingomonas abietis
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SWIM
DEAD
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
WBO24260
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All DBs
Position
1896629..1900054
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AA seq
1141 aa
AA seq
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MLPEITDAVLTRAIATPRMVSAGLDYWRRRLVVGLSVDLESGTIRASVKGSEPKPYQVEV
RFGPRGAVATRCSCPVGAGCKHAAAALFAVRLSEASGTDTHKPRTSMSLISAGTLPPPLS
MEPLSPILSRWATAMRPFAERASRLSAPPSRAIIYVVRVQALTGNMRISKKRPAASLAPR
GCALRLFVEAVDVGLDVAGEPVGNGTKVQTAGFYGSGNSPAHMTDEDRLLTRRLQMRIGD
TDQEGCLTGAGGADLLERVLATGRARWASVRGPQLRQEKNVKAELGWMHDDLGRACLSVA
GTTSEQIIALATPPVSIDVLSGTISPLDLGIPPDMAEQLLRLPPIEPEAISALAVRWADL
VPGDVPPPAVPTIRDLGMVSPAPVLTVRMDRVEMVTYGGRYRYGSKSRVDCAVARLLFDY
AGTTIDATMAEQTILVRDDEGLVRFTRDPDGELEAMGRLLHTGLIPLIEFEDVEPTPRQD
WDHAPDMPATAADFTSFLLHDAEELRGEGWRVDVAPDFPLRFVAADADSLSVDVEPSGID
WFDIALGATIDGERVDLVPALRRLLATIDWAELDILEHELTEAGDILPIALGDGRVVTVE
AVRVLPMLRALLLLAANDPASATSRGKPGFSRLDLGLLGEIESSTAGLPWSGIEPLRRLA
RNLSQLRFDPTPLPASFGATLRPYQQTGLDWLEALAHAGLGGLLADDMGLGKTVQALAHI
AVQKAGGNLEKPILIVAPTSVLPNWQAEISRFVPTLSALLLHGPDRHGRHEDITAHDIVL
TSYPLLVRDQAALANEQFGLVLFDEAHMLKNPHTAGHAAAKILVADRKVALTGTPVENRL
TDAWALIDLVLPGLLGNQRAFVRDYRNPIEKHGDAEAKARLARKLKPFLLRRTKDAVAVD
LPAKSIVPLTITLGTAQMALHESQRLLMQQRVRDEIARVGLMRAQIMVLTALTRLRQVCC
DPRLLPGQGSKPPRSAKLERLLELIDEMVAEGRQIILFSQFTSMLDLIKPALDHHGHGWT
ELTGKTKDRKAPVARFQAGEVPLILVSLKAGGTGLNLTSADTVILYDPWWNPAVEAQAID
RAHRIGQQKPVFVYRMIATGTIEEKILALQERKAALAEALWSEDAAAPAHLTEDDIAFLL
G
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgttgccggagatcaccgatgccgtcctgacgcgcgccatcgcaacgccacggatggtg
agcgcaggtctggactattggagacgcagactcgttgtcgggttgagcgtcgatctcgag
agcgggaccatacgggcatcggtcaaaggcagcgagccgaagccttatcaggtagaagtg
cgcttcggcccgagaggcgcggtcgcgacgcgatgcagctgtccggtcggcgcgggatgc
aagcatgcggccgccgcattattcgctgtgcggctgagcgaggcgagcggcaccgacact
cacaagcctcgtacctcgatgtctctgatatctgctggcactctcccaccaccattatct
atggagcctctctcaccgatcctgtcgcgatgggcgacagcgatgcgcccgtttgccgag
cgcgcgagtaggctgtccgccccgccgtctcgagcgattatctacgtcgtccgcgtccag
gccctcacagggaacatgcgtatctcgaagaaacgccctgcggcctcgctggcaccacgc
ggctgcgcgctacggctgttcgtcgaagccgtcgatgtcgggctcgatgtcgcgggtgag
ccggtgggcaacggcacgaaggtgcaaaccgcaggattctatggcagcggaaatagcccc
gcacacatgacagacgaagatcggcttctcacccgacgcttgcagatgcggatcggcgac
accgatcaggaaggttgtctcaccggcgccggaggcgcggatttgctcgaacgcgtgctc
gcgaccggacgcgcccgctgggcgagcgtacgcggtccgcagctccgccaggagaagaac
gtcaaggccgagcttggctggatgcacgacgatctcggccgggcgtgcctgtcggtcgca
gggacaacgtcggaacagatcatagcgttggcgacgcctccggtatcgatcgatgtgtta
agcggcacgatttcgcccctcgatctgggcatcccgccggacatggccgaacagctgttg
cgccttccgccgatcgagccggaggcgatttcggcgttggcggttcgctgggcagatctc
gtgcccggcgacgtgccgccacccgccgtgccaacgatccgggatcttggcatggtgtcg
ccggcgcctgttcttacggttcggatggatcgtgtagagatggtgacctatggcgggcgt
tatcgctatgggagcaagagccgggtggattgcgcggtcgcgcgcctcctgtttgattat
gccggcacgacgatcgatgcgacgatggccgagcagacgatactggtccgtgatgacgaa
gggctcgtccgtttcacgcgtgatcccgatggcgagctggaagcgatggggcgactgctc
cataccggcctgatcccgctgatcgagttcgaggatgtcgagcccacgccgcgccaggat
tgggaccatgcgccggacatgcctgccactgcagcggacttcacgtcctttctgctccat
gatgcggaagagttgcgaggtgaaggatggcgcgttgatgtcgcaccggacttcccgctt
cggttcgtcgcggccgatgcggacagcctgtcggtagacgtcgagccatccggcatcgac
tggttcgatatcgcgctgggtgccacgatcgacggggaacgggtcgatctcgtgccggcg
ctccgccggttgctcgcgaccatcgactgggcggagctcgacattctggagcatgagctc
accgaagctggcgacattctgccgatcgcgctcggcgatggcagagtggtgacggtcgaa
gcggtgcgtgtcctgccgatgttgcgtgcccttctgctgctggccgcgaacgacccggca
tcggcgacgtcgagggggaaaccgggcttctcccggctcgatctcggattgctgggcgag
atagaatcctcgaccgccggcctgccctggagcggtatcgagccgctacgccgccttgcg
cgcaacctgagccagcttcgcttcgatccaactccgcttcccgcaagtttcggcgccacc
ttgcggccctatcagcagactgggctcgactggctggaggcgctcgcacacgctggcctg
ggcggcctgctcgccgacgacatgggcttgggcaagacggtccaggcgctggcgcatatc
gcggtgcagaaggcggggggcaacctcgaaaagccgatcctgatcgtcgcaccgacgtcc
gtgctgcccaactggcaggcagagatatcgcggtttgtgccgacgctgtccgctttgctg
cttcatggtcccgatcgacatgggcgccatgaagacatcacggcccacgacatcgtcctg
acgagttatccgctgctggtacgcgatcaggcagcgcttgcaaacgagcagttcgggctc
gtcctgttcgacgaagcccatatgctcaagaacccgcacaccgccgggcatgccgccgcc
aagatactggttgccgatcgcaaggtggcgctgacggggacgccggtggagaacaggctc
accgacgcttgggcgctcatcgatctggtcctgccgggattgcttggcaatcaacgtgcc
ttcgttcgtgactatcgcaatccgatcgagaaacatggggatgccgaagcgaaggcgcgc
ctcgcgcgcaagctcaaacccttcctgttgcgtcggaccaaggatgctgtcgccgtcgat
ctgccggccaagtcaatcgttccgctcacgatcacactcggtacggcgcagatggcgctg
cacgaaagccagcgtctcctgatgcaacagcgcgtgcgcgatgaaatcgcgcgggtcggg
ctgatgcgcgcgcagatcatggttctcaccgcgctgacccggcttcgccaggtgtgctgc
gatccccggctgctaccggggcagggcagcaagccgccaagatccgccaagctggagcgc
ctgctcgaactcatcgacgagatggttgcggagggacggcagatcatcctgttcagccag
ttcacctcgatgctcgatctcatcaagcccgcgctcgatcatcatggtcatggctggacc
gaactgaccggcaagaccaaagatcgcaaggcgccggttgcgcggttccaggccggtgag
gtgccgctcattctggtgagcctcaaggcaggcggcaccggcctcaatctcacaagcgcg
gacaccgtcattctctatgatccctggtggaatccagctgtcgaggcgcaggcgatcgac
cgcgctcaccgtatcggccagcaaaagccggtgttcgtttaccggatgatcgcgaccggc
acgatcgaggagaagattctggctctgcaggagcgtaaggcagccttggccgaagcatta
tggagcgaggatgccgccgcgccggcacacctcaccgaggacgatatcgcctttcttctc
ggctga
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