Sphingomonas abietis: PBT88_10805
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Entry
PBT88_10805 CDS
T09690
Name
(GenBank) autotransporter outer membrane beta-barrel domain-containing protein
Organism
sabi
Sphingomonas abietis
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WBO20706
LinkDB
All DBs
Position
complement(2261305..2268417)
Genome browser
AA seq
2370 aa
AA seq
DB search
MIRLTPSVRRCRLSLAIGTSTLACGLFFPTASHAQCTPDPTQENGTTNCSGTNTNGLVVN
TFNTQVVAAQGATLNPGAAMAAITVSSSYDVLTIDGMVDGAGKAGIAVIAGPPTSAPCDP
YAFASVSYCTPGSSMTIYPSASATINVAAGATVTGSQALSVSRDPSNPNGYVSVSMDNAG
TLTGTAGPALVAPVPVGGFAGFLSITNEATGFVGGMSGGISAVNNAGTVDGGGNAAIATS
ISGAYIANTGRIVSSGQAATLSGTGALYVTNAGGAILGGGGTAINTSGPLSLTNAGTING
SVISTAAAGQDSVIDTRQGMINGDLTLGAGNDTLLATFDSATGRISSITGAIDGGAGTDT
LSIAVSSDATFGAVALPTNFELLGVDLSNNATITLSPAFASTGGIALSGYGSVVNMANLS
TNGPAVVATPTGSVLSFTNQASITANLSATSQFAVSSPTELINIGTITAIGGAGAQAAST
LTNSGTIAATGTAATVAYGTLANSGVIGSTGGIGAAINSSYYYAASTNSGTISGATTGVN
LSGTLTNSGTITGGATGVALGYSGTLINAAGGTVTGGTGVGNVGYSVRVVNAGTINGDVN
LASTSGFDSSDDIFVDAGGTVNGAVSLGGGDDQLVVNLGTDSSRPFAGATGGVDAGTGYN
TLRYRVKADAAAALTLPTSFEALAYELDNNAQLTLTAPTPIITAIGLTGNGTVTLNGSIA
TSDHTLIDATIPTADQLTLGVAGPAQALSIVNDGMLSLTIGAQGYSYNQLYAINAGTADV
TNNGTIATSNAAGSYFPAIAILNGHNVTNNGTITLAGGGVGISDAQNVVNAGTITDTPGS
GAVGVAYFDTLQNSGTIQVDGTAVQSAFYQAGSIVNSGLIESRQATAVQLGGYGATLTNE
TTGTISGVTAVDVSSGGAIINRGAIVGDISSYQYSYGNTAYLADGGTVTGNVTFGAASDL
FVETGTGTGVSGIVDGGDGEDTFGHVLNSSGIVALDGEANVINFEDALVQAAGIGTVAMI
TATNPFAGRVYIGGDGSVINQATINGMVTTGIPYSGAILPTYDYAVAAFTNQGTIAGGFF
GATQRFANSGTIGGDMLEDSAILISQSSALEFTNSGTIANDGSQLTVNLDTQDEIAIAND
GKITGGGVYAAINTSSAGPAASSSVMATPSIAMTNTGTITASGTAVSLSINNYAGLLPSS
VTLDNSGMIETGTAGGTAVSIGINDAVTDGSVGKSSVTVTNSGTIRANAGGIAPQPGNPY
FPSSTVPASAIGVYGDGVAHIANAGTGLIEATGALSTAIITNGMALDLTNAGTIRGGTGT
TLADDDYLGVQNGTTYLAGAIQSYGDTADKIVNTGTIIGSISLGAGNDTVENRGTIAGDV
FLGAGDDSFLEQASATVTGTVDGGEGLNSLIIDASGGGTVNGDQFVNFQRFNQVGNGNVI
YTGNFHSDTIGVTGGSLTVAAGQTLGSDGATTITGSDAAETVVNNGTITGSVALGGGNDL
LVNNGAISGSVSLGDGDDQFVEGVGSSVAGTVDGGAGNDLYTVVLAGNRTGIGQRTGFER
LALQGSGTLSLVLDQNFQSIALGGNSLNLSLGGHSVGTVTGTDAAETLVVDGDIANVSLG
GGDDTLALGTTHAAGSYDGGTGNNTLRFTATAPVSLSGTATNFGTVLLAGNALTVTGTLG
SPGTTLSFGAGDQSLTVANGGTLAGAVDLGDGNDNFWLAAGGTLAGTINGGAGINTATVE
LAGSRTLAAGTLIGFETLAAEGTGQLTLSGAQAFSTVTSDTDIVVAAGGSLTANQVQFGA
GDNRFTIAGGFNGSVDGGAGNDILVVSGGSDGAPVMFGNISNVETYSQSAGSAQISGTAA
FTGLGLTGGRLVGQAGSIITASQIQVSQGATFGSAGTVNGNVTIAGTLSPGASLGTMTVN
GNVTLASGSTSLFELSSAVSDKLMVNGSVAIGAGSTLQLVEVGTLRPGTAYTLISATGGI
TGGYTTVLKPADLFGFVVQRGNEIDLLGKFLDSGGFGPQVSRSIAYTNTTLEAQASTSTL
FDALPALLTSTGASNPQAFARLTPEAYASATQMGVDNALVLVDAARGPSFAATGEGAHVY
TLASTLGQWHQLNEDRSAGTSAARSQGYGFLSGIGYGDTNWSLGAFGGYINNRQTVGALA
ARTKANGAVAGVQGRLHTASGFGFSAAIIYDGSRATTTRVLPVGSARGRYGLHSWISDMK
ASYEIALPRDWAVTPQLGVTYLRTSRGGVSETGGSPFALTVSHDRHVAGFTDGAVSFGRS
AASAARFRPFVSFGVRYQIEGAHTDALAGYAGGGLGLDAPGAPRARLVGTASGGIDYRLE
SGLDFFANAASQTGSDDHQESASAGVRFRF
NT seq
7113 nt
NT seq
+upstream
nt +downstream
nt
atgatccgtttaacgccatcggtgcgtcgttgccgtttgtcgctcgcaatcggcaccagc
acattggcatgtggactcttcttcccgacggcttcacacgcgcagtgcacgccggatccg
acccaagaaaacgggaccaccaactgtagcggcaccaatacgaacggcctggtcgtgaac
acgttcaacacacaagtcgtcgcggcacagggggcgaccttgaatccgggggctgccatg
gcagccattaccgtcagctccagctacgatgttttgacgattgacggtatggtcgacggc
gccggtaaagccggtatcgcggtgatagcggggcctccgacatctgcgccttgcgacccc
tacgcgttcgcgtccgtcagctactgcacgcccggaagctcgatgaccatctatccctcc
gcgagtgcgacgatcaacgtcgcagccggcgccaccgtcacgggttcccaggcgctttcg
gtgtcgcgtgatccgagcaatcccaacggctatgtcagcgtatcgatggacaatgcagga
acgctgactggtacggcagggccggccttggtcgctcccgtaccggtcggcggcttcgcc
gggttcctgtcgatcaccaacgaggcaactgggttcgtcggcggcatgtcggggggcata
agcgcggtcaacaacgccggcacagtcgatggcgggggcaacgctgcgatcgcgaccagc
atatctggcgcgtatatcgccaacacgggccggatcgtctccagcgggcaggcggccaca
ctgagcgggacgggcgcgctttacgtcaccaatgcaggcggcgccatcctcggcggcggc
ggcacagcgatcaatacgagcggccccctatcgctcaccaatgccggcacgatcaatggg
tcggttatatcgaccgcagcggctggacaggacagtgtaatcgacacgcgccagggcatg
atcaacggcgatctgacgctcggcgccggcaatgacacgttgctggcgacgttcgactct
gccacgggccggatctcctcgatcacgggcgccattgacgggggagcggggacggacacg
ctgtcgatcgccgtcagcagtgacgccaccttcggcgcggtcgcgctgccaaccaacttc
gagctgctgggggtcgatctcagcaacaacgcaaccattaccttgtcgcctgcatttgcc
agtaccggcggcatcgcgctcagtggctatggtagcgtcgttaacatggccaacctgtcc
acaaacggacccgccgtggtcgcgacgccgaccggctcggtcctgtccttcaccaatcag
gccagcatcaccgccaacctctcggcgaccagccaattcgcggtgagttcgcccaccgag
ctgatcaatatcgggacgatcacagccattggcggtgcaggggcgcaggcagcctcgacc
ttgacgaacagcggcaccatcgccgctacagggactgctgctacggtggcatatggcacc
ctggccaacagcggcgtcattggttcgacgggcgggatcggcgcggcgatcaatagctcc
tattattacgccgcatcgaccaacagcggcacgatcagcggtgcgacaacgggtgtgaac
ctttccggtacgctcaccaacagcggcacgatcacgggcggggcaaccggtgtcgcgctc
ggctattcgggaacactgatcaacgccgccggcggaacagtcacgggcgggaccggcgtc
ggcaacgtcggatattcagttcgagtagtgaacgcaggcacgatcaacggcgacgtcaat
ctcgcctccacgtccggcttcgactcgtccgatgacatcttcgtcgacgcgggcggcacg
gtgaacggcgccgtcagcttgggcggaggggacgaccagctggtggtcaatctcgggacc
gactcgagccgacccttcgccggggcgacgggcggagtcgatgccggcaccggctacaat
acgttacgctatcgcgtgaaagccgatgccgccgcagccctgacgctcccaaccagcttt
gaggcgctcgcctacgagctcgacaacaatgcccaactcacactgaccgctcccaccccg
atcatcaccgcgatcgggctgaccggcaacggcacggtgacgctaaacggctccatcgcg
accagcgatcatacgctcattgatgcgacgatcccgaccgcggatcagctgaccctgggt
gttgcagggcctgctcaggcactatccatcgtcaacgatggtatgctcagcctaacaatc
ggggcgcagggttacagctataatcaactttacgcgatcaacgccggaaccgctgacgtt
accaataacggcacgatcgcgaccagtaacgccgcaggcagctattttccggccatcgcc
atcttgaacgggcataacgtcaccaataatggaacaatcacgctggcgggcggcggtgtc
ggaatcagcgatgcccaaaatgtcgtcaacgcgggtacgatcaccgatacaccgggctcc
ggtgctgtcggcgtggcctatttcgacaccttgcagaacagcggaacgatccaggtggac
ggcaccgccgttcagagcgctttttatcaggccggctcgatcgtcaacagcgggttgatt
gagagccgccaagccaccgccgtccagttgggcggctatggcgcgacgctgaccaatgag
acgactggaacgatcagcggcgtcaccgcggtcgacgtctcgtcgggcggggcgatcatc
aaccgaggcgccattgtgggcgatatctcgtcttatcaatattcctacggcaacacggcc
tatctcgccgatggcggcacggtcaccggcaacgtgaccttcggggcggcttccgatcta
ttcgtggagaccggtacggggacgggtgtctctggtatagtagacggcggcgacggtgag
gacacgttcggccatgttctgaacagcagcgggatcgtcgcgctagacggcgaagcaaac
gtcatcaacttcgaggacgcgctggtccaagccgccgggatcggaaccgtcgcgatgata
accgcgacgaatccctttgccggccgagtctacatcggcggcgacggcagtgtcatcaac
caggccacgatcaatgggatggtgacgacgggcattccctattcgggtgcgatccttccg
acctacgattatgcggtggcagcctttacgaaccaaggcacgatcgcgggcggctttttc
ggcgcaacccagcgctttgccaacagcggcacgattggcggagatatgctcgaggactcc
gcgattttgatcagccagagttctgcgctcgaatttaccaacagcggaacgatcgcgaac
gacggaagccaattgacggtcaacctggacacgcaggacgagattgcgatcgccaacgac
gggaaaatcacaggtggcggggtctatgcggcaatcaacaccagcagtgctggccccgca
gcgtcctcgtcagtcatggcgacgccgtccatcgccatgaccaacacgggcacgatcacc
gcgagcggcacggcggtgtcgctgtcgatcaacaattatgccggactgctgcccagctcg
gtaacgctcgacaatagcggcatgatcgagacgggcactgcgggcgggacagccgtgagt
atcggcatcaacgacgccgtcaccgacggcagcgtcggcaagagcagcgtcaccgttacc
aattctggcacgatccgtgccaatgctggcggcatcgcgccccagccgggcaacccctat
tttccgtcctctaccgtgccggcctcagccatcggcgtctatggtgacggcgtcgcccat
atcgccaacgctggcaccggcttgatcgaggcgaccggggcgctgtccaccgcgatcatc
accaacgggatggcgctcgacctcaccaatgcgggtacgatccggggcggcaccggtact
acactggccgatgacgactatctgggtgtgcagaacggcacgacctacctcgccggcgcg
atccagagctatggcgatactgcggacaagatcgtcaacaccggcaccatcatcgggtcg
atatcgctcggcgccggtaacgatacggtcgaaaaccgcggtacgatcgccggcgacgtt
ttcctcggcgccggcgacgatagcttcctggaacaggcgagcgcgaccgttaccggcaca
gtggatggtggcgaggggctcaactcgctgatcatcgatgcgtccggcggcggcacggtg
aacggcgatcagttcgtcaatttccagcgcttcaatcaggttggcaacggcaacgtcatc
tataccggcaattttcattccgacacgatcggcgtcaccggcggcagcctcactgtcgca
gccggtcaaacgctgggcagtgacggcgcgaccacgatcactggcagcgacgcggccgag
acggtggtcaacaatggcactattaccggctcggtcgcgctgggcggcggcaacgacctg
ctggtcaacaatggcgcgatctcgggatcggtctcgctgggagatggcgacgatcagttc
gtcgagggcgttggcagcagcgtcgcgggcacggttgacggcggcgcgggcaatgatctt
tacacggtggtgctggccggcaaccgtaccggcatcggccagcgcacgggcttcgagcgg
ctcgctctgcagggtagcggcacgctgtcgctggtgctggaccagaacttccagtcgatc
gcactgggcggcaacagcctcaacctttcgctcggtggccactccgtcggcaccgtgacc
ggaaccgacgcggccgaaacgctggtggttgacggcgacatcgccaatgtttcgctgggt
ggcggcgacgacacgctggcgctcggcaccacgcacgcggcgggaagctatgacggcggg
acaggtaataatacgctgcgcttcacggcgacagcgccggtcagcctgtcgggcacggca
accaatttcgggaccgtgttgctggctggcaatgcgctcaccgtcaccggcacgcttggc
agccccggcacgacgctctcgttcggcgcgggcgaccaatcgttgacagtggcgaacggc
ggcacgctcgctggcgcagtcgaccttggcgatggcaacgacaatttttggctcgccgcg
ggcggcacgctagccggcacaatcaatggcggagccggcattaacaccgccaccgtcgaa
ctcgccggcagccgtacactcgctgcgggcacgctcatcggcttcgagacgctggcggcg
gaaggaaccgggcagctgacgctcagtggcgcccaggccttcagcaccgtcaccagcgac
accgacatcgtcgtcgcggcgggcggctcgttgaccgcgaatcaggttcaattcggagcg
ggcgacaaccgcttcaccatcgccggcggcttcaatggctcggtggacggcggcgcgggc
aatgatattctcgtcgtttcggggggcagcgatggcgcgccggtcatgttcggcaacatc
agcaatgtcgagacctacagtcagtcagccggctctgcgcagatctccggcaccgccgcg
ttcaccgggctcggcttgacgggcggtcgcctcgtcggccaggctggatcgatcatcacc
gcgtcgcaaatccaggtcagccagggcgcgaccttcggctcggcgggcaccgtcaacggc
aacgtgaccatcgctggcacgctcagcccgggtgcgtcgctgggaacgatgacggtcaac
ggcaacgtcactctcgccagcggctccacgtcgctgttcgagctgtcttcggccgtttcg
gacaagttgatggtcaacggcagcgttgcgatcggcgccggctctacgcttcagctcgtc
gaggtcggcacgctccggcccggcacggcatacacgctgatctccgcgacgggcgggatc
accggcggctacacgacagtcctcaaaccggccgacctgttcggcttcgtcgtccagcgc
ggcaacgaaatcgacctgctgggcaagttcctcgacagcggcggcttcggcccgcaggtc
agccgcagcatcgcctataccaacaccacgctggaagcgcaggcctcgaccagcacgttg
ttcgacgcgctgccggccctgctgaccagcacaggcgcctccaacccgcaggcctttgcc
cgcctgacgccggaggcctatgcctcggcgacccagatgggtgtcgataacgcgctggtc
ctggtcgatgcggcgcgcgggccatccttcgctgcgaccggcgagggcgcgcatgtctac
acgttggcgtccacgctggggcagtggcaccagctcaacgaagaccgaagcgccggcaca
tcggcggcgcggagccagggatacggcttcctgagcgggatcggctatggcgacacgaac
tggagtttgggtgcgttcggcggctatatcaacaaccgccagacggtcggggcgctcgcg
gcacgcaccaaggcgaatggcgcggtcgcgggtgtgcagggccgcctgcacacggccagc
ggctttgggttcagcgcggcgatcatctacgacggcagccgcgcgactacgacacgcgtc
ctaccggtgggctcggcaaggggacgctacggcctgcacagctggatcagcgacatgaag
gcgagctacgagattgccctgccacgtgactgggcggtgaccccgcagctcggcgtgacc
tatctccgtaccagtcgcggcggcgtgtccgagactggtggcagcccctttgcgctgacg
gtctcgcacgaccgccatgttgcaggattcacagacggcgcggtttcattcggccgcagc
gcggcatcggctgcgcggttccgtccgttcgtgtcattcggtgtacgttaccagatcgag
ggcgctcacaccgatgcgctggccgggtatgccggcggcggtctcggcctggatgcgccc
ggtgccccacgcgcccggctggtgggcaccgcgtccggcggcatcgactatcgcctggaa
agtggtctggatttttttgccaatgcagcgtcgcaaaccggaagcgacgaccatcaggag
tcggcatcggccggtgtacgtttccggttctga
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integrated database retrieval system
