Sphingomonas abietis: PBT88_14005
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Entry
PBT88_14005 CDS
T09690
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sabi
Sphingomonas abietis
Pathway
sabi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sabi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PBT88_14005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sabi03019
]
PBT88_14005
Enzymes [BR:
sabi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PBT88_14005
Messenger RNA biogenesis [BR:
sabi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PBT88_14005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WBO21298
LinkDB
All DBs
Position
2951680..2952963
Genome browser
AA seq
427 aa
AA seq
DB search
MTNTTFANLSLAPFLLQALSEEGYVSPTPIQAQSIPMLLEGRDMLGMAQTGTGKTAAFAL
PLLHRLAADPRPAPKGGARVLVLAPTRELVSQIAAGFESFGRHLKPSVTTIFGGVSQFHQ
VNALKEGVDIIVAAPGRLLDLIEQGLCDLSALEALVLDEADQMLDMGFAKPIERIVATLP
ADRHTLLFSATMPKSITALADSLLRDPAKVEIAPPSTTVDRIDQSVMFLNAANKKAALLE
LLRTPDMGQAVVFTLQKNIANEVCAFISEAGITAEALHGNKSQGQRERALDAFRAGDVQV
LVATDIAARGIDVDTVTHVFNHDLPSLPEAYVHRIGRTGRAGRSGYAVTLCDAEQRAWLH
DVERTIGRTLTVQHDHPWHCEVARHSTQRAPVLGGGPAKQIKPQKVRERRVWTEEEKLAA
RMAASAA
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgacgaacacgactttcgccaatctttctctggcgccgtttttgctgcaggcgctcagc
gaagagggctatgtcagcccgacgccgatccaggcccagtcgatcccgatgctgctcgag
gggcgcgacatgctgggcatggcgcagaccggcaccggcaagaccgcggccttcgcgctg
ccgctgctgcatcgccttgctgccgatccccgccccgcccccaagggcggcgcccgcgtg
ctggtccttgccccgacccgcgagctggtctcccagatcgccgccggcttcgagagcttc
ggccgccatctcaagcccagcgtgaccacgatcttcggcggcgtcagccagttccaccag
gtcaatgcgctcaaggagggcgtggacatcatcgtggcggcgccggggcgcctgctcgac
ctgatcgagcagggtctgtgcgacctgtccgcgctcgaggcgctggtgctggacgaggcc
gaccagatgctcgacatgggcttcgccaagccgatcgagcgcatcgtcgcgacgctgcct
gcggatcgccacaccctgctgttctcggcgaccatgccgaagtcgatcaccgcgctcgcc
gacagcctgctgcgcgatcccgccaaggtcgagatcgccccgccgtcgaccacggtcgat
cgcatcgaccagtcggtgatgttcctcaatgcggcgaacaagaaggcggcgctgctcgaa
ctgctgcggacgccggacatgggccaggcggtcgtcttcaccctgcagaagaacatcgcc
aacgaggtctgcgccttcatcagcgaggccgggatcaccgccgaggcgctgcacggcaac
aagtcgcagggccagcgcgagcgcgcgctcgacgccttccgcgcgggtgacgtgcaggtt
ctggtggcaaccgacatcgccgcgcgcggcatcgacgtcgacaccgtcacccatgtcttc
aatcacgacctgccgagcctgccggaggcctatgtccaccggatcggccgcaccgggcgc
gccgggcgcagcggctatgccgtgaccctgtgcgatgccgaacagcgcgcctggctgcat
gatgtggaacggaccatcggccggacgctgacggtccagcacgatcatccctggcattgc
gaggtggcgcggcactccacccaacgcgcgccggtgctggggggcggcccggcgaagcag
atcaaaccgcagaaagtgcgggagcgcagggtctggaccgaggaagagaagctcgccgcg
cggatggcggcaagcgccgcctga
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