Sphingomonas abietis: PBT88_15705
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Entry
PBT88_15705 CDS
T09690
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
sabi
Sphingomonas abietis
Pathway
sabi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sabi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PBT88_15705 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sabi03400
]
PBT88_15705 (uvrA)
DNA repair and recombination proteins [BR:
sabi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PBT88_15705 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PBT88_15705 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_21
AAA_29
AAA_16
nSTAND1
AAA_25
DnaJ_CXXCXGXG
DUF4350
AAA_23
ATPase
RecA
nSTAND3
CA109-like
Motif
Other DBs
NCBI-ProteinID:
WBO21609
LinkDB
All DBs
Position
3328508..3331567
Genome browser
AA seq
1019 aa
AA seq
DB search
MLTHISVRGAREHNLKDVSLDLPRDKLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSA
YARQFLELMQKPDVDHIEGLSPAISIEQKTTSRNPRSTVATVTEIYDYMRLLWARVGIPY
SPATGLPISAQTVSQMVDRVMALPEGTRALLVAPVVRGRKGEYKKELALWQKDGFQRVRI
DGTVYEIDEAPALDKKYKHDIEIVVDRLVIRAPEPGDDSNGLATRLAQSFETALKLAEGL
AYVDVMDSPDSVRPEPVEGRDAGEASGARASTGSARTGGMKGLVLPEGISERITFSEKFA
CPVSGFTIAEIEPRLFSFNAPQGACPACDGLGEKLYFNPELVVPNENLSIKQGAVVPWAK
SNPPSPYYMQVLSSLAREYDFDLATPWKDLSEEDRDTILHGTRGRAVTLKFMDGRKSYEV
KKPFEGVIGNLDRRMLQTESAWMREELAKYQSSRPCEVCDGARLKPEARAVKIAGEDISM
STRRAVGPALKFFREMPEHLNEQQNQIAERILKEIVERLGFLDNVGLDYLNLDRTSGTLS
GGESQRIRLASQIGSGLSGVLYVLDEPSIGLHQRDNDRLLVTLRRLRDLGNTVIVVEHDE
DAIRTADHIVDMGPGAGVHGGAIVAEGSLADILANEDSLTGDYLSGRRSVPLPARRRTGN
GKQITVKGARANNLKDVSASIPIGTFTCITGVSGSGKSTFTIDTLFASASRTLNGARIQA
GHHEKIEGLQHLDKVIDIDQSPIGRTPRSNPATYTGAFTQIRDWFAGLPESQARGYKPGR
FSFNVKGGRCEACSGDGLIKIEMHFLPDVYVTCDVCHGQRYNRETLEVTFKGKSIADVLD
MTCEDAVEFFKAVPGIRDKMAMLVEVGLGYVKVGQQATTLSGGEAQRVKLAKELSRRATG
NTLYILDEPTTGLHFEDVRKLLEVLHALVEQGNTVVVIEHNLEVIKTADWLIDLGPEGGD
KGGEIVAVGTPEDVVQVERSYTGRYLKPLLGGANVVSAAPVKAAGKRKVAAKKAKAMAE
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgctgactcatatttccgtccgtggtgcccgcgagcacaacctcaaggatgtctcgctc
gatctcccgcgcgacaagctgatcgtgatcaccgggctgtccggctcgggcaagtcgagc
ctcgccttcgacaccatctatgccgaggggcagcggcgctacgtcgagagcctgtcggcc
tatgcgcgccagttcctcgaactgatgcagaagccggacgtcgatcatatcgaggggctc
tcgccggccatctcgatcgagcagaagacgacgagccgcaacccgcgctcgacggtcgcc
accgtcaccgaaatctacgactatatgcgcctgctgtgggcgcgggtcggcatcccctat
tcgccggccaccggcctcccgatcagcgcgcagacggtcagccagatggtcgaccgggtg
atggcgctgcccgaggggacgcgcgcgctgctggtcgcccccgtggtccgcggccgcaag
ggcgagtataagaaggagctggcgctgtggcagaaggacggcttccagcgcgtccgcatc
gacggcaccgtctacgagatcgacgaggcgccggcgctcgacaagaaatacaagcatgac
atcgagatcgtcgtcgatcgcctggtgatccgcgcgcccgagccgggcgacgacagcaac
ggcctcgccacccgcctggcgcagagcttcgagaccgcgctcaagctcgccgagggattg
gcctatgtcgatgtgatggacagcccggattccgttcgtcctgagcctgtcgaaggacgt
gacgcaggcgaggcatccggagcacgtgcttcgacaggctcagcacgaacgggggggatg
aaaggtctggtgctccccgaaggcatctcggaacgcatcaccttctccgagaagttcgcc
tgcccggtctcgggcttcaccatcgccgagatcgagccgcggctattctcgttcaacgcg
ccgcagggcgcctgcccggcctgcgacgggctcggcgagaagctctatttcaaccccgag
ctggtcgtccccaacgagaatctgtcgatcaagcagggcgccgtcgtgccgtgggcgaag
agcaacccgccctcgccttattacatgcaggtgctgagcagcctcgcccgcgaatatgat
ttcgacctggcgacgccgtggaaggatctctccgaggaggatcgcgacaccatcctgcac
ggcacccgcggccgcgcggtgacgctgaagttcatggacgggcgcaagagctacgaggtc
aagaagccgttcgagggcgtgatcggcaatctcgatcgccgcatgttgcagaccgagagc
gcgtggatgcgcgaggagctcgccaaatatcagtcgagccgcccctgcgaggtgtgcgac
ggcgcccgcctcaagcccgaggcgcgcgcggtgaagatcgccggcgaggacatcagcatg
tcgacccgccgcgcggtcggccccgcgctgaaattcttccgcgagatgcccgagcatctc
aacgagcagcagaaccagatcgccgagcgcatcctcaaggagatcgtcgagcggctgggc
ttcctcgacaatgtcgggctcgactatctcaacctcgatcgcacctccggcacgctcagc
ggcggcgagagccagcgcatccgcctcgccagccagatcggctcgggcctgtcgggcgtg
ctctacgtgctcgacgagccgagcatcggcctccaccagcgcgacaatgaccggctgctg
gtcacgctgcgccggctgcgcgatctcggcaacaccgtgatcgtggtcgagcatgacgag
gatgcgatccgcaccgccgatcatatcgtcgacatggggccgggcgccggcgtccatggc
ggcgcgatcgtcgccgagggcagcctcgccgacatcctcgccaacgaggacagcctgacc
ggcgactatctctccggccgccggagcgtgcccctcccggcccggcggcgcacgggcaat
ggcaagcagatcaccgtgaagggcgcgcgcgccaacaatctcaaggatgtcagcgcctcg
atcccgatcggcaccttcacctgcatcaccggcgtctcgggatcgggcaagtcgaccttc
accatcgacaccctgttcgcgtcggcgtcccgcactctcaacggcgcccgcatccaggcc
gggcatcatgagaagatcgaggggctccagcatctcgacaaggtgatcgacatcgaccag
tcgccgatcggccgcaccccgcgctcgaacccggcgacctataccggcgccttcacccag
atccgcgactggttcgccggcctccccgaaagccaggcgcgcggctacaagcctggccgc
ttctcgttcaacgtcaagggcgggcgctgcgaggcctgctcgggcgacgggctgatcaag
atcgagatgcacttcctgcccgacgtctacgtcacctgcgacgtctgccacggccagcgc
tacaaccgcgagacgctggaagtgaccttcaagggcaagagcatcgccgacgtgctcgac
atgacctgcgaggatgcggtcgaattcttcaaggcggtgcccggcatccgcgacaagatg
gcgatgctggtcgaggtcgggctcggctacgtcaaggtcggccagcaggcgaccacgctg
tcgggcggcgaggcgcagcgcgtcaagctcgccaaggagctctcccgccgcgccaccggc
aacaccctctacatcctcgacgagccgaccaccggcctccatttcgaggatgtccgcaag
ctgctcgaggtgctccacgcgctggtcgagcagggcaatacggtggtggtgatcgagcat
aatctcgaagtcatcaagaccgccgactggctgatcgacctcggtcccgaaggcggcgac
aagggcggcgagatcgtcgcggtcggcacgcccgaggatgtggtgcaggtcgagcggagc
tatacggggcggtatttgaagccgttgttggggggagcgaatgtggtgagcgcggcgccg
gtgaaggcggcgggcaagcggaaggtggcggccaagaaggcaaaggcgatggcggagtag
DBGET
integrated database retrieval system
