Sphingomonas abietis: PBT88_16480
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Entry
PBT88_16480 CDS
T09690
Name
(GenBank) strawberry notch family protein
KO
K26273
protein strawberry notch
Organism
sabi
Sphingomonas abietis
Brite
KEGG Orthology (KO) [BR:
sabi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sabi03036
]
PBT88_16480
Chromosome and associated proteins [BR:
sabi03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
PBT88_16480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
ResIII
MTS
RsmJ
Motif
Other DBs
NCBI-ProteinID:
WBO21749
UniProt:
A0ABY7NP96
LinkDB
All DBs
Position
complement(3498627..3502913)
Genome browser
AA seq
1428 aa
AA seq
DB search
MSLPLLAAVVPPANGKATKLLGVATCLASRLDRGATIRRQDLTRAMEEAFGVTDATGAWT
LRDAYDALEAAQVLMLRRAPMAGGLDLSGEDAFATLKWLEGTLPTQTFRSEHQVAFQQFS
TPIALAWLVGQAARMSSDDTVLEPSAGTGMLAVHAVRAGASLLLNERDPDRATLLAQLLD
VMVSDHDGEFIHDLLPTGVVPNVVLINPPFSHSEGRGRDRFAGARHLRAALVRLAPGGRC
VAIMPPNFASDGTAASGYAMVAETVPPRVEITILGNPYAKHGTSIAVRLLVFDKGWAGQT
ERHTAATIDEAAGIVAMLPQRLSPPDAGPPSPAIVPLRPRRSISPSPASLFGGLARRTLA
APVRVAADTRPKPLVYAVRDTPRASGDPVGHYAPWRPARIAIEGARPHPDQLVESLAMAS
VLPPAPDYQPLLQAHAFAALSDAQLETIIHAGEACERDLPGTFSPNQAGDQLQPDPEGAT
YRTGYFIADGTGVGKGREGAGIILDNWNRGRRRAIWISRSAALLEDARRDWSALGGLPID
VQPLDAFPLGDAIAMDSGILFLTYATLRSQRHDRASRLQQILDWAGPDFEGVILLDESHA
LGNAAGTETDYGAAKGSEQGLAGVRLQIALPRARVIYVSATGATKPENLSYAARLGLWGL
GTAFRDRDAFLGAMEEGGIAAMEIVARDTKAMGLYTARALSFAGVEYDPLEHKLTPGQIE
IYDAYADAWAIIHRNLDAALKAANIVDRASGQTLNAMAKGSALSRFESSKQRFWSALLIS
MKMPSVFEAIETEIAGGNVAVVQLVSTAEAILDRRLAELSAEERANLDLELSPRATMIDY
IKTAFPTQQMQVFASSDGSLRSEPMRDADGQLVQCQEAIAARDALIEDLCAMPPVPAALD
ALLAHFGTDQVAEVTGRSRRIVIGADGNQKLERRGGRANLSETQAFMDGRKPILVFSDAG
GTGRSYHADLNSGTAAKRRIHFLLEPGWRADVAIQGLGRTHRTNQSVPPVFRPVTTDCKG
ERRFISTIARRLDSLGALTRGQRQTGGQNLFNPADNLESDYAREALTQWYHLLHGGKLAS
VKLDAFVGMTGLKLTDDNGVLLDKLPPIQRWLNRILALRIATQNAIFDEYMGLIQARVDA
AREAGTLDVGVETIRAETVIALSERTLRADPVTGAETRLLRLELHLKPRVTSWKRLMQIW
EGTREISYLYNSRSKRIALKVPSWSITDEEGRIVPMCQLVRPTGATRMQEIAMWASLWKE
IDRDAFQARWEVETAEAEAQVDTEIVNVATGLLLPVWHKLPEDDVRVWRIDDGEGFSVLG
RIIPPAGVVELESAFGLDGSIELTPAELRGSAQSGSQIAIPGLDGAKLTSALVNGTRRLE
IRDYRPEDREHLKALGAFSEVIQYRTRLFVPLDRADEVLDAIMRRKVS
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcccgcttctcgctgctgtcgtgccgccggcgaacggcaaggccaccaagctc
ctcggcgtcgctacctgccttgcatcgcgcctcgaccgcggcgccacgatccgacgccag
gatctcacccgcgcgatggaggaggcgttcggcgtcaccgacgcgaccggcgcctggacc
ctgcgcgacgcctatgacgcgctcgaagccgcccaggtgctgatgctgcgtcgcgcgccg
atggccggtggcctcgacctctcgggcgaggacgccttcgcgacgctcaaatggctcgaa
ggcacgcttccgacccagacgttcaggagcgagcatcaggtcgcgttccagcagttcagc
acgccgatcgcgcttgcatggctcgtcggtcaggccgcccggatgtcatcggacgatacg
gtgctcgaaccctcggccggcacgggcatgctcgccgtccatgcggtccgggccggcgcc
agcttgctgctcaacgagcgggatccggaccgtgccacgctgctcgcccagctactggac
gtcatggtgtccgaccacgacggcgagttcattcacgacctcctgcccaccggcgtggtg
cccaatgtcgtgctgatcaacccgcccttcagccacagcgaagggcgtggcagggaccgc
ttcgcaggcgcccgccatctccgcgcagcattggtgcggctagcaccgggcggccgctgc
gtggcaatcatgccgccaaatttcgcgtccgacggcacggccgcgagcgggtatgcgatg
gtcgccgagaccgtgccgccgcgcgtcgagatcaccatactcggcaacccatatgcaaag
catggcaccagcatcgcggtccgccttctcgtcttcgacaagggctgggccggccagacc
gagcgccacaccgccgctacgatcgacgaagcggccggcatcgtcgccatgctcccacag
cgcctctcgcctccggatgcgggaccgccgtcgccggccattgtgccgttgcggccaagg
cgctcgatctcgccgtcgcctgcatcgctgttcggagggcttgcccggcgcaccctggcg
gcgcctgtgcgggttgcagcggacacgcgccccaagccgctggtctacgccgtccgtgat
acgccgcgcgcatcgggcgatcctgtcggccattacgcaccctggcgtccggctcgcatc
gcaatcgagggcgcgcgcccgcatcccgaccagctcgtcgaatcgctcgccatggcctcc
gtgctgccgccggcgccggactaccagcccctgctgcaggcgcatgccttcgcggccctg
tccgacgcgcagctcgagacgatcattcatgcaggcgaagcgtgcgaacgtgatctaccg
ggcaccttttcgcccaaccaggctggcgaccagcttcaacccgatcccgagggtgcgacc
tatcgcaccggctacttcatcgccgacggcaccggggtcgggaaaggccgggaaggcgcc
ggcatcatcctcgacaactggaatcgcggtcgccgccgcgccatctggatctcgcgcagc
gcagcacttctcgaagatgcccgccgcgactggagcgcgctcggcggtcttccgatcgac
gtccagccgctcgatgcgttcccgctgggcgacgcgatcgcgatggacagcggcatcctg
ttcctgacctatgcaacgctccggtcgcagcgtcacgaccgcgcctctcgcctccagcaa
atcctcgactgggctggccccgatttcgagggcgtcatcctgctcgacgagtcccatgcg
ctcggcaacgctgccggcaccgagaccgactatggcgcggccaaagggtcggagcagggg
cttgccggcgtccgcctgcagatcgcgctgcctcgtgcccgcgtcatctatgtgtcggcc
accggcgccaccaaaccggagaatctgagctacgccgcgcgtctgggtttgtgggggctg
ggcaccgcctttcgcgaccgcgacgcctttctcggcgcgatggaagaaggcgggatcgcg
gcgatggagatcgtcgcgcgcgataccaaggcgatgggcctctatacggcgcgcgcgctc
agcttcgcgggcgtcgaatatgatccgctcgaacacaagctcacgcctggtcagatcgag
atatacgacgcctatgccgatgcctgggccataatccatcgcaatctcgatgcggcgctc
aaggccgctaatatcgtcgatcgcgcctcgggccagacgctcaacgcgatggccaagggc
tccgcgctcagccggttcgaaagctccaagcagcgcttctggtccgcgctgctcatctcg
atgaagatgccgagcgtattcgaggcgatcgaaaccgaaatcgccggtggcaatgtcgcc
gtcgtccagctcgtcagcaccgccgaagccattctcgaccgccggctggccgaactctcg
gccgaagaacgcgcgaatctcgatctcgagctgtcgccgcgcgcgacgatgatcgactat
atcaagacggcgttcccgacccagcagatgcaggtgttcgcaagctcggacggctcgctt
cgctccgagccgatgcgcgatgcagacggccagctcgttcaatgccaggaagcgatcgca
gcgcgcgatgcgctgatcgaggacctatgtgcgatgccgccggtcccggccgcgctcgac
gcgctacttgcgcatttcggcaccgaccaggttgcagaagtgaccggccgctcgcgccgc
atcgtcatcggcgccgatggcaaccagaagctcgaacgtcgcggcggtcgtgccaatctt
agcgagacccaggcgttcatggacgggcgaaagccaatcctggtcttcagcgacgccggc
ggcacggggcgttcctaccatgccgacctgaactcgggcaccgcggccaagcggcgcatc
cacttcctgctcgaaccgggctggcgcgccgacgtcgcgatccagggcctggggcgcacc
caccgtaccaaccagagcgtgccgcccgtctttcgaccggtcacgaccgattgcaaaggc
gagcgccggttcatctcgaccatcgcgcgccgcctcgacagtctcggcgcgcttacccgg
ggacagcgccagacgggtgggcagaacctcttcaatcccgccgacaacctcgaaagcgat
tatgcgcgagaggccctgacgcagtggtatcacctgctccacggcggcaagctcgccagc
gtgaagctagacgccttcgttggcatgaccgggctcaagctgaccgacgacaatggcgtg
ctgctcgacaagctcccgccgatccagcgctggctcaaccgaatcctggcgcttcgtatc
gccacccagaacgcgatcttcgacgagtatatgggcctcatccaggctcgcgtggacgca
gcgagagaggccggcacacttgatgtcggcgtcgagaccatccgggccgagacggtgatc
gccttgtcggagcgaacgcttcgcgctgatccggtgacgggcgccgaaacccggctgctg
cgactggagctccatctcaagccccgtgtcaccagttggaagcgcctgatgcagatctgg
gaggggacgcgcgagatctcctacctgtacaatagccgctcgaagcggatcgcgctcaag
gtgccgtcctggtcgatcaccgacgaggaaggacggattgtaccgatgtgccagctcgtg
cggccgactggcgccacccgcatgcaggagattgcgatgtgggcgagcctctggaaggaa
atcgatcgcgacgctttccaggcacggtgggaagtcgagacggcggaagccgaggctcag
gtcgataccgaaatcgtcaatgtcgcgaccggcctcctgctgccggtgtggcacaagctt
cccgaagacgatgtccgcgtctggcggatcgacgatggcgaaggcttctcggtgctcggc
cggatcatcccgcctgccggcgtcgtcgaactggaaagcgcattcgggctcgatggctcg
atcgaactgaccccggcggagctgcgcgggtctgcgcaatcggggtcgcagatcgcaatc
cccggtctggacggggcgaagctcacgagcgcgctggtcaacggcacgcgccgcctcgaa
atccgggactaccggcccgaggatcgcgagcatctgaaagctctcggggcattcagcgag
gtgatccagtatcgcactaggctcttcgtgccgctcgaccgcgccgacgaggtgctcgac
gccatcatgaggcgcaaggtctcatag
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