Sphingomonas abietis: PBT88_20775
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Entry
PBT88_20775 CDS
T09690
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sabi
Sphingomonas abietis
Pathway
sabi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sabi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
PBT88_20775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sabi03019
]
PBT88_20775
03009 Ribosome biogenesis [BR:
sabi03009
]
PBT88_20775
04131 Membrane trafficking [BR:
sabi04131
]
PBT88_20775
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sabi04147
]
PBT88_20775
Messenger RNA biogenesis [BR:
sabi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
PBT88_20775
Ribosome biogenesis [BR:
sabi03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
PBT88_20775
Membrane trafficking [BR:
sabi04131
]
SNARE
SNARE associated proteins
Others
PBT88_20775
Autophagy
Aggrephagy
Other aggrephagy associated proteins
PBT88_20775
Exosome [BR:
sabi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
PBT88_20775
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_5
CDC48_2
AAA_22
AAA_33
AAA_2
TIP49
AAA_14
IstB_IS21
AAA_28
nSTAND3
NPHP3_N
RNA_helicase
AAA_7
AAA_18
Mg_chelatase
ABC_tran
AAA_30
AAA_3
TsaE
AAA_11
DUF815
AAA_17
Sigma54_activat
Zeta_toxin
AAA_24
ATPase
NB-ARC
Parvo_NS1
bpMoxR
PhoH
SLFN-g3_helicase
Viral_helicase1
CPT
AstA_C
Motif
Other DBs
NCBI-ProteinID:
WBO22536
UniProt:
A0ABY7NST6
LinkDB
All DBs
Position
4380354..4382660
Genome browser
AA seq
768 aa
AA seq
DB search
MADADTLDQTRSARLQVANARPDDSGHGLARLPRRAMQMLGVVDGDVVEIVGKRTTPARA
VQPYPEDEGLDILRLDGLQRANAGVGSGDFIEVRKADSKPAQRVVFAPAQENLRLQGSGA
ALKRSFQMKPLTAGDVVATTGQQRVTQDDLPPQLRQMLNRPAYSLQEIRLVVVSTTPKGI
VHIDQTTEVELRAEYEEPKEARRADVTYDDLGGLGDTIDQIREMVELPLRYPELFERLGV
EPPKGVLLHGPPGTGKTRLARAVANESDAEFFHIAGPEIMGSAYGESEKRLRDVFEAATK
AAPSIVFIDEIDSIAPKRGQVTGEAEKRLVAQLLTLMDGLEKRTNLVVIAATNRPEAIDE
ALRRPGRFDREIVIGVPDERGRREILGIHTRGMPLGDTVDLKELARTTYGFVGADLAALC
REAAIEAVRRIMPKLDLEERTIPPEVLDELSVTREDFLGALKRVQPSAMREVMVQAPNVG
WDDIGGLDAAREKLREGVELPLKHPDAFRRMGIRAAKGFLLYGPPGTGKTLLAKAVAREA
QANFIATKSSDLLSKWYGESEQQISRLFARARQVAPTVIFIDELDSLVPARGGGLGEPAV
TERVVNTILAEMDGLEELQSVVVIGATNRPNLIDPALLRPGRFDELVYVSVPDEGGRRRI
LGIHVGKMPLADDVDLDVLARRTDRFTGADLEDLVRRAGLMALRDSLDAQTVTMAHFTHA
LEETRASVTPEMEREYEQMASRLKQDAMAIEPIGFVSPGMFKPADKSA
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgccgacactctcgatcagacccgcagcgcgcggctgcaagtcgccaatgcg
cgccccgatgacagcgggcacgggctggcgcgcctgccgcgccgtgcgatgcagatgctc
ggcgtggtcgacggcgatgtcgtggagatcgtcggcaagcgcacgactccggctcgcgcc
gtgcagccctatccggaggatgaaggcctcgatatcctgcgcctcgatggcctccagcgg
gccaatgccggggtcggatcgggggacttcatcgaggttcgcaaggccgacagcaagccc
gcccagcgggtcgtgttcgcacctgcacaagaaaatctccgtctccaagggtcgggcgcg
gcgttgaagcgcagcttccagatgaagccgctgaccgccggcgatgtcgtcgccaccacc
ggccagcagcgagtgacgcaggacgacctgccgccccagctgcgccagatgctcaaccgg
ccggcctattcgctccaggaaatccgcctcgtcgtggtttcgaccacgcccaagggcatc
gtccatatcgaccagaccaccgaggtggagctgcgcgccgaatatgaggagcccaaggag
gcgcggcgcgccgacgtgacctatgacgatcttggcggtctcggcgacacgatcgaccag
atccgcgagatggtcgagctgccgctgcgctaccccgaactgttcgagcggctcggcgtc
gagccgcccaagggcgtgctgctccacggcccgcccggcaccggcaagacccggctcgcc
cgcgccgtcgccaatgagagcgatgccgagttcttccatatcgccggccccgagatcatg
ggatcggcctatggcgagagcgagaagcgcctgcgcgacgtgttcgaggcggccaccaag
gcggcaccgtcgatcgtcttcatcgacgagatcgattcgatcgcgcccaagcggggccag
gtgaccggcgaggccgagaagcgtctcgtcgcgcagttgctcacgctgatggacgggctg
gagaaacgcaccaacctggtcgtcatcgccgccaccaatcgccccgaggcgatcgacgag
gcactgcgccggcccggccgcttcgatcgcgagatcgtgatcggcgtgcccgacgagcgc
ggccgccgcgagatcctcggcatccacacgcgcggcatgccgcttggcgacacggtcgac
ctcaaggagttggcccgcaccacctacggattcgtcggcgccgatctcgccgcgctgtgc
cgcgaggcggcgatcgaggcggtgcggcggatcatgcccaagctcgacctcgaggaacgc
acgatcccgcccgaggtgctggacgagctgtcggtgacccgcgaggattttctcggcgcc
ctgaaacgcgtgcagccctcggcgatgcgcgaggtgatggtgcaggcgcccaatgtgggc
tgggacgatattggcggccttgatgccgcacgcgagaagctgcgtgagggcgtcgaactg
ccgctgaagcatcccgatgccttccgccgcatggggatccgcgccgccaagggcttcctg
ctctatgggccgcccggcaccggcaagaccctgctcgccaaggcggtcgcgcgcgaggcg
caggccaatttcatcgccaccaagtcgagcgacctgctcagcaaatggtatggcgagagc
gagcagcagatcagccggctgttcgcccgcgcccgccaggtcgcgccgacggtgatcttc
atcgacgagctcgattcgctggtgccggcgcggggcggcgggctgggggagccggcggtg
acggagcgggtggtcaacaccatcctcgccgagatggacgggctggaggaattgcagtcg
gtcgtcgttatcggcgcgaccaaccggcccaacctgatcgacccggcattgctccggccg
ggccgcttcgacgaactggtctatgtctccgtgcccgacgagggcggccggcggcgcatc
ctcggcatccacgtcggcaagatgccgctggccgacgatgtcgatctcgacgtgctggcg
cgccgcaccgatcgcttcaccggcgcggacctggaggatctggtacgccgcgctgggctg
atggcgctgcgcgattcgctcgacgcgcagaccgtgacgatggcccacttcacccatgcg
ctcgaagagacccgcgcctcggtcacccccgagatggagcgcgaatatgagcagatggcg
tctcgcctgaaacaggatgcgatggcgatcgagccgatcggcttcgtttcccccggcatg
ttcaagccggccgacaagagcgcctag
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