Flaviramulus sp. BrNp1-15: MBM09_07505
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Entry
MBM09_07505 CDS
T07901
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sabu
Flaviramulus sp. BrNp1-15
Brite
KEGG Orthology (KO) [BR:
sabu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sabu03009
]
MBM09_07505 (rlmD)
Enzymes [BR:
sabu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MBM09_07505 (rlmD)
Ribosome biogenesis [BR:
sabu03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MBM09_07505 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_25
MTS
Cons_hypoth95
Methyltransf_15
TRAM
PrmA
FtsJ
Methyltransf_11
UPF0020
Methyltrans_SAM
N6_N4_Mtase
PCMT
Methyltransf_2
NagA_C
Methyltransf_4
DUF5590
Motif
Other DBs
NCBI-ProteinID:
ULC60836
LinkDB
All DBs
Position
complement(1698780..1700192)
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AA seq
470 aa
AA seq
DB search
MSRRKARKQVFENVEVIDAGAKGKTIAKAPDGKVIFLPNAVPGDVVDVQTFKKRKAYYEG
KATVFHKLSDKRTEPVCEHFGTCGGCKWQDMAYEHQLFYKQKEVTNNLTRIGHIELPEVT
PILGSENQYFYRNKMEFSFSDSRWLTLKEIQSDKDLGDKNALGFHIPGMWDKILDIKKCY
LQEDPSNAIRNSVKQFAVENDLEFFNTRNQTGFLRTMMIRTSSTGDIMVMVQFFKEDKAK
RELLLDFIAKSFPEITSLQYVINEKANDTIYDQEVICYKGTDHIFEEMEGLKFKINAKSF
YQTNSHQAYELYKITRNFAGLTGEELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPDAITA
AKENAQLNNINNVEFFVGDMKNVFNTDFINQHGEPDIIITDPPRDGMHKDVVQQILNIAP
KKVVYVSCNSATQARDLALMDAQYKVTKTQAVDMFPQTHHVENVVLLERR
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgtctagaagaaaagcaagaaaacaagtttttgaaaacgtagaggtgattgatgctggc
gctaagggaaaaaccatagctaaagcaccagacggaaaggttatttttttaccaaatgct
gtacctggcgatgtggtagatgtacaaacttttaaaaagcgtaaagcttattatgaagga
aaagctactgtttttcataaactttctgataaaagaaccgaacctgtttgcgaacatttt
ggtacttgtggtggttgtaaatggcaagatatggcttacgaacaccaactattttataaa
caaaaagaagttaccaataacttaacacgtattgggcatatagaattacctgaagttaca
cctattttaggttcagagaaccaatatttctacagaaataaaatggaattttcatttagt
gatagccgttggttaacacttaaagaaatacaatctgataaagatttaggcgataaaaat
gctcttggttttcatattcctggaatgtgggataaaattttagacattaaaaaatgctat
ttacaagaagatccctcaaacgccattagaaattctgtaaaacaatttgctgtagaaaat
gatttagaattcttcaatacacgcaaccaaacaggtttcttacgcaccatgatgattaga
acatctagcacaggggatatcatggttatggttcaattttttaaagaagacaaagcaaag
cgagaattgttattagattttatagcgaaatcctttccagaaataacctcattacaatat
gttattaatgaaaaagcaaatgatactatttacgatcaggaagtgatttgttataaaggt
accgaccacatttttgaggaaatggaaggtttaaagtttaaaataaacgcaaaatccttc
tatcaaacaaactcgcatcaagcttatgaattgtacaaaatcacacgaaattttgcaggt
ttaactggagaagaattagtatatgatttgtacacaggaaccggaactatagcacaattt
gtagcaaaaaaagctaaaaaagtaattggtgttgaggctgtacccgatgctataactgcc
gcaaaagaaaatgcacaattaaacaacataaataacgttgaattctttgttggtgatatg
aaaaatgtgtttaatacagatttcattaatcaacatggggaacctgatattattattact
gatcctccacgagatggtatgcataaagatgttgtacaacaaatattaaatattgcaccc
aaaaaagtggtttatgtaagttgtaatagtgccacacaggccagagatttagcattaatg
gatgctcaatataaagtaacaaaaacccaagcagtagatatgtttccacaaacgcatcat
gtagaaaatgttgtacttttggaaagaagatag
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