Flaviramulus sp. BrNp1-15: MBM09_09680
Help
Entry
MBM09_09680 CDS
T07901
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sabu
Flaviramulus sp. BrNp1-15
Brite
KEGG Orthology (KO) [BR:
sabu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sabu03016
]
MBM09_09680
Enzymes [BR:
sabu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MBM09_09680
Transfer RNA biogenesis [BR:
sabu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MBM09_09680
Prokaryotic type
tRNA splicing ligases
MBM09_09680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF1329
Motif
Other DBs
NCBI-ProteinID:
ULC60934
LinkDB
All DBs
Position
2199013..2200404
Genome browser
AA seq
463 aa
AA seq
DB search
MSFRDDMRVPARVLAVESLLDDIIEDRSLNQLVNVATLPGIQKSSFVMPDVHEGYGFPIG
GVAATKYPDGVISPGGIGYDINCGVRLLISTLNIDDVKDRVEALAKEMYAQIPSGMGKGG
NINLSKEDMEQVLSKGAEWAIENGYGIHEDLTYIESNGKLADADPSFVSEMAKKRGTDQL
GTIGSGNHFVEVDYVDEIYDKHIAKAYGLKKGQMVVLIHTGSRGLGHQVATDHIRIMMNA
MAKYNIKLKDRELACVPFNSQEGQNYFKAMCAAANYAWCNREVISWEARKAWKNIFGEEG
GNLKLLYDIAHNIAKIETYLINGIEQKLIVHRKGATRAFGPSFKELPEAYINIGQPVIIP
GSMGTCSYVLAGAEKSKFVTFGSCCHGAGRRLSRTAAKKQVNAPALKEKLKERGIHIEAG
SFKGIAEEAPIAYKDVNLVVETVHASGVAKKVAKLKPVAVVKG
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttagagacgatatgagagttcccgcaagagtgctggcggtcgaatcactgttg
gatgatattattgaagatagatcactaaatcaacttgtaaacgtagctactttaccaggt
attcaaaaatcttcatttgtaatgcccgatgtgcatgaaggttacggattccctataggc
ggtgtagcagctaccaaatatcctgatggtgttatttcacctggtggtattggctatgat
attaattgtggagttaggttacttatatcaactttaaatatagatgatgtaaaagataga
gtagaagccctagctaaagaaatgtatgcacaaattccttcaggaatgggtaaaggaggt
aatataaatctttctaaagaagacatggaacaagtgttgagcaagggtgcggagtgggca
attgagaatggttatggaattcatgaagatttaacttatatagaaagcaatggaaagtta
gctgatgcagatccgtcttttgtatcagaaatggctaaaaaaagaggaacagatcaattg
ggaactattggatctggtaaccattttgtagaagtggattatgttgatgaaatttacgat
aaacacattgctaaagcctatggtttaaaaaaaggacaaatggttgtgttaatccataca
ggttcaagaggtttaggacatcaagtagcaactgatcacattcggattatgatgaatgcc
atggctaaatacaacatcaagcttaaagatagagaattagcatgtgttccttttaattca
caagaaggtcaaaattattttaaagccatgtgtgcagcagctaattatgcttggtgtaat
cgtgaagttatttcttgggaagctcgtaaagcgtggaagaatatttttggagaagaaggc
ggaaacttaaaactgttatacgatattgctcataatattgctaaaattgaaacttactta
ataaacggaatagaacaaaagttaattgttcatcgtaaaggagccacaagagcatttggt
cctagttttaaggaactcccagaagcctatataaatattggacaacccgttattattcct
ggtagtatgggaacttgttcttatgtcttagcaggagcagaaaaaagtaagtttgtcact
tttggttcgtgctgtcatggagcaggaaggcgtttatctagaactgctgccaaaaaacaa
gtcaatgcacctgctttaaaagaaaagttaaaagaaagaggtattcatatcgaagcaggt
tcatttaaaggtattgcagaagaagcgcctattgcatacaaagatgtgaatttagtagta
gaaacagttcatgcttccggtgtggctaaaaaagtagccaaattaaaacctgtagctgtt
gtaaaaggatag
DBGET
integrated database retrieval system
