Flaviramulus sp. BrNp1-15: MBM09_11950
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Entry
MBM09_11950 CDS
T07901
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sabu
Flaviramulus sp. BrNp1-15
Pathway
sabu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sabu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MBM09_11950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sabu03019
]
MBM09_11950
03400 DNA repair and recombination proteins [BR:
sabu03400
]
MBM09_11950
Enzymes [BR:
sabu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MBM09_11950
Messenger RNA biogenesis [BR:
sabu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MBM09_11950
DNA repair and recombination proteins [BR:
sabu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MBM09_11950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
DUF7960
Motif
Other DBs
NCBI-ProteinID:
ULC58632
LinkDB
All DBs
Position
2706085..2707989
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AA seq
634 aa
AA seq
DB search
MEHPINILERYWGFTSFRPEQEAIINAVIDGEDSFVLLPTGGGKSLCFQIPALAKDGICI
VISPLIALMKDQVQQLNNKGIKAMAITSGISYSQLDTLLDNCIYGNYKFLYLSPERLQQE
LVQERIRQMNVNLIAVDEAHCISQWGSDFRPAYKNIALLRQLQPSINIVALTASAKPEVV
DDIIKELDFIQPKIFKQSFLRPNLAYMVFHENDKYYRLETILKKNHASSIIYVRNRKSTL
EVSEFLKSKNITATYYHGGLSNPEKDTHMTAWLNNQKQVMVATNAFGMGIDKPDVKTVIH
LNLPESIESYFQEAGRAGRNGEKAFAVILKNNSDEVLVKNQFLSVLPTVDFVKQVYRKLC
NYFQISYGEGAYQTFDFDFNTFCKTYKFSSILCYNALLLLDRNSVITLSKQFKNKVTVQF
IVSNNALFHYLDTHEDFNSIVKSILRLYGGIFDHITKIDLGKIEAKASVTESKLIDTLQQ
LERDEIISLNLAKTDAQITFIEPREDDKTINRIASTIEQQNKLKQQQVKAMLNYVENDSV
CKSIQLLSYFGEKDTKPCGICSVCITSKKNESPKDINTIKKDVIELLENGDKSSRDIIAH
LKYSENDLKTVIKLLLEHQIITLTSTNTYKLSHL
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggaacacccaataaacatactcgagcgttattggggttttacttcatttagacctgaa
caagaagctattattaatgcagttattgatggtgaagactcttttgttttactaccaaca
ggcggcggaaaatcgttatgctttcaaattccggcattagcaaaagatggtatttgcatt
gttatttcgcctttaattgcactaatgaaagaccaagttcagcaactaaacaacaaaggt
ataaaagccatggctattacaagtggaattagttatagtcaattagacacgcttttagat
aattgtatttatggcaactataaatttttatatctctcgccagaacgtttgcaacaagag
ttagtgcaagaacgtattaggcaaatgaatgttaatttaattgctgttgatgaggcacat
tgtatttcacaatggggaagcgattttaggcctgcttataaaaacattgcactgttacgt
caattgcaaccatctattaatattgtagctctaaccgcttcggcaaaaccagaagttgta
gatgatattattaaagaactggattttattcaacctaaaatatttaaacaatcgttttta
agacccaatttagcttatatggtgtttcatgaaaatgataaatattacagacttgaaact
attttaaaaaaaaatcatgcatcttctattatttatgttagaaatagaaaatctactcta
gaagtaagcgaatttttaaaatctaaaaatataacagctacgtattatcacggtggactt
tcaaatcctgaaaaagatacacatatgactgcttggttaaacaaccaaaaacaagttatg
gtggccaccaatgcttttggtatgggtattgataaaccagatgtaaaaacagttatacat
ttaaatttacccgaaagcatagaaagttattttcaggaggctggtcgtgctggtagaaat
ggagaaaaggcgtttgcagttattttaaaaaacaacagtgatgaagttttagttaaaaat
caatttttgagtgttttacccacagttgactttgtaaaacaagtatacagaaaactctgc
aattattttcaaatatcttatggagaaggcgcttaccaaactttcgattttgattttaac
accttttgcaaaacctataaatttagttcaatactatgttacaatgccttattgctacta
gatagaaatagtgtcatcactttatctaaacaatttaaaaacaaagtaaccgtacaattt
attgtttctaacaatgcactttttcattatttagacacacatgaggattttaatagtatt
gtaaagtccattttacgtttgtatggtggtattttcgaccatattacaaaaatcgattta
ggcaaaattgaagctaaagcttcagtaactgaaagtaaacttatagatactttgcaacaa
ctagagcgtgatgaaatcatcagtttaaatttagcaaaaactgatgctcaaattacattt
atagagccaagagaagatgataaaaccataaatagaattgcctcaacaatagagcaacaa
aacaaattaaagcaacaacaagttaaggctatgcttaattacgttgaaaacgattcagta
tgtaaaagcatacaactgctctcctattttggtgaaaaagacacaaaaccttgtggtatt
tgttcggtttgcataacttctaaaaagaatgagtctccaaaagatataaacaccattaaa
aaggatgttatagaattattagaaaacggagacaaatcatcaagagacatcatagcacat
ttaaaatattctgaaaacgacttaaaaacggttataaagttacttttagagcatcaaatt
ataacattaacatcaacaaacacatataaattaagtcatttatga
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