Flaviramulus sp. BrNp1-15: MBM09_13095
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Entry
MBM09_13095 CDS
T07901
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sabu
Flaviramulus sp. BrNp1-15
Pathway
sabu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sabu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MBM09_13095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sabu03019
]
MBM09_13095
03009 Ribosome biogenesis [BR:
sabu03009
]
MBM09_13095
Enzymes [BR:
sabu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MBM09_13095
Messenger RNA biogenesis [BR:
sabu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MBM09_13095
Ribosome biogenesis [BR:
sabu03009
]
Prokaryotic type
rRNA helicases
MBM09_13095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
Motif
Other DBs
NCBI-ProteinID:
ULC58843
LinkDB
All DBs
Position
2949611..2951401
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AA seq
596 aa
AA seq
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MSTFQELGLNDDLLQAITDLGFTKPSEVQEKAIPILLNSESDLVALAQTGTGKTAAFGFP
MLQKIDVDSRTTQGLILSPTRELCLQITNEMKLYGKYCKGLNVVAVYGGSSITDQAREIK
RGAQIIVATPGRMKDMISRRLVDISKIQYSVLDEADEMLNMGFKEDITDIISHTPEDKNT
WLFSATMPREVATIAKKFMHNPQEITVGNKNESTSNVSHEYYLVNARDRYQALKRLSDAN
PDIFSVIFCRTKRDTQKVAENLIEDGYSAGALHGDLSQNQRDLVMKSFRNQQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKTGISMVIVSKSEVRKIKSIERI
IKKQFEKKDIPDGSEICEVQLMSLANKIHNTEINHEIDKHLTSINELFEDTDKDELIKKF
FSVEFTRFYNYYQKSKNLNVAEGSFDRDGGRDYKGGKNDSTRYFINVGGKDGFDWMKLKD
FLKEQLGLGRDDVFKVETKDSFSFFNTENELKEKVLAHFTDFKHEGRFVNVEVSENRGGG
RRNDRRGGGKRSGGRRDDRKDGSGNRSDRRRSEGKSKPRRSNSGDFAASRPRRSRR
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgagcacattccaagaattaggtcttaatgacgacctattacaagctattactgattta
ggttttacaaaaccaagtgaagtacaagaaaaagcaatcccaattttattaaattctgaa
tctgatttagtggcattagcccaaaccggaaccggaaaaacggccgcatttggtttcccg
atgcttcaaaaaatagatgtagatagtagaaccactcaaggtttaattttatcgccaaca
cgtgaactttgtttacaaattaccaacgaaatgaaactttacggaaagtactgtaaagga
cttaatgtagttgcagtttacggtggatcaagcattacagatcaagcacgtgaaattaag
cgaggagcacaaattattgtagctactccgggacgtatgaaagatatgattagcagacgt
ttggttgatatatcgaaaatacaatacagtgttttagatgaagctgatgaaatgctaaac
atgggctttaaagaagatattactgatattatttctcatacaccagaagacaaaaataca
tggttattttcggctacaatgcctcgtgaagtggcaactattgctaaaaaattcatgcat
aacccacaagaaattactgttgggaataaaaatgaaagtacaagtaatgtatctcacgaa
tactatttagtgaatgcgagagatcgttatcaagcattaaaacgtttatctgatgctaat
cctgatatattttcggttatattctgtagaacaaaacgtgatactcaaaaagtggccgaa
aacttaattgaagatggttatagcgctggcgctttacacggcgatttaagtcagaaccaa
cgtgatttggtcatgaaatcgtttagaaaccaacaaatacaaatgcttgtagctaccgat
gttgctgctcgtggtattgatgttgatgatattacacacgttataaattaccaattacct
gatgaaattgaaacgtacacacaccgttctggtcgtacagggcgtgctggtaaaacaggt
atttcaatggttattgtatcgaaaagtgaagtgcgtaaaattaaaagtattgagcgcatt
attaaaaaacaattcgagaaaaaagatattcctgatggatcagaaatttgtgaagtgcaa
ttaatgtcgcttgcaaataaaattcataatactgaaattaatcatgaaattgataaacat
ttaactagtattaatgaattatttgaagatactgataaagacgaattaattaaaaaattc
ttctctgttgagtttacacgtttttataattattaccaaaaatctaaaaacttaaatgtt
gctgaaggctcttttgatagagatggtggtcgtgattataaaggtgggaaaaacgattct
acacgttactttataaatgttggtggtaaagatggttttgactggatgaagctaaaagac
ttcttaaaagaacagttaggcttaggtagagatgatgtttttaaagtagaaacaaaagat
agtttctcgttttttaatactgaaaatgaattaaaagagaaagtattagctcattttacc
gactttaagcatgaaggacgttttgtaaatgttgaagtgtctgaaaatcgtggtggtgga
agacgcaacgacagacgtggtggcggaaaacgtagtggcggaagaagagatgacagaaaa
gatggttctggaaacagaagtgatagacgccgtagtgaaggaaaatctaaaccaagacgc
tcaaattctggtgattttgcagcttcaagaccaagacgttctagaagataa
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