Saccharibacillus brassicae: FFV09_10810
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Entry
FFV09_10810 CDS
T06082
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
saca
Saccharibacillus brassicae
Pathway
saca03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
saca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FFV09_10810 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saca03400
]
FFV09_10810 (mfd)
Enzymes [BR:
saca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FFV09_10810 (mfd)
DNA repair and recombination proteins [BR:
saca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FFV09_10810 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
BID
SecA_DEAD
AAA_22
Efg1
Ribosomal_S30AE
Motif
Other DBs
NCBI-ProteinID:
QDH21297
UniProt:
A0A4Y6UYJ8
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All DBs
Position
2584397..2587930
Genome browser
AA seq
1177 aa
AA seq
DB search
MLNALIKEVARDQDFISIQKAAAAGMKEQLVAGLSGSARQLMMAGLHQELERPLLIVTHN
IFSAQKIADDLQEALPEGSVLFYPANELVAAESAISSPETIAQRIEVLTRCAEGFKGVLV
VPFSGLRRFVPDPEEIRAAQFTIEEGGTLDLEHFLLRMVELGYSRVERVETRGEMSVRGG
IVDFFPTTSALAYRIELFDDEVDSIRTFDPEDQRSIDKVKSVRIRPSRELVASGKRMSQA
ADAAAELLEKQLERMTDRKAKTALQQEIGREIELLRQQIHFPEMYKYVSLIYPERRTLYD
YMPDDTLLMMEEPSRLLDTAAQLERDEAEWNLHLLQSGKSLPDLPLALEGDTAIYQRPFQ
TLFLSLFVRQIPRTHPGQVVNVVSRTMQDFHGQMNVLKAEMERWKKSNMRVIMLAGDDER
AERIRQVLEDYEIETPEIMRGHLQGGFELPSAHLVVITEGELFAQKQRKVRKSTSTKQID
NAERIKSYTELKVGDYVVHQNHGIGKYLGIGTLEVGGIHKDYMHIMYAGGDKLSVPIEQI
DLIQKYVGAEDKEPKVYKLGGNEWTRVKTKVRSSVQDIADDLIKLYAERQASAGYSFDKD
TPDQNDFENTFPYEETRDQLRAIEEIKGDMEMTRPMDRLLCGDVGYGKTEVAIRAAFKAA
IEGKQVAILVPTTILAQQHYETFRERFEGYPFNIGVLSRFRSRKEQNETIKGVKQGTIDV
IIGTHRILSQDLVFKDLGLLIVDEEQRFGVTHKEKLKRLKTNVDVLTLTATPIPRTLHMS
MLGVRDLSVIETPPENRFPVQTYVVEYSPTLVREAIERELARGGQVYYLYNRVQGIHEKA
AEISELVPDARVSVGHGQMSEQELERTILDFLEGESDVLVSTSIIETGVDIPNVNTLIVH
DADKMGLSQLYQMRGRVGRSNRIAYAYFSYQKDKVLTEVAEKRLQSIKEFTELGSGFKIA
MRDLSIRGAGNLLGAEQSGFIASVGFDLYSQMLAEEIQKRKISMLGEAPAEDKHWSTMID
LSIDAYLPSDYIYDSIQKIEIYKKVAAATTFEEVLELEDELLDRFGELPEAVVRLMQVAR
FKIYGRTYGIESIARRGDDLLVTFYEGQEKAADPSKLAQVGNQFESSVQFKQGTPLAFQI
KGRSLPESERLGTLERVLDALQQAFKSKGELHDAVKS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaacgcgcttatcaaagaagttgcccgggaccaggactttatctcgattcaaaag
gccgctgcggccgggatgaaggaacagttggtcgcgggcttgtcgggctcggcgcgccag
ctgatgatggcgggcctgcatcaggagctggaacgtccgctgctgatcgtcacgcacaat
attttttcggctcaaaaaatcgcggatgatcttcaggaagcgcttcccgaaggaagcgtg
ctgttctacccggccaacgaactggtcgcggcggaatcggcgatctcgagtccggagacc
atcgcgcagcgtatcgaagtgctgactcgctgcgccgaagggttcaagggcgtgctggtc
gtgccgttctccggcctgcgccgcttcgtgccggacccggaagagatccgcgccgcccag
ttcacgatcgaagaaggcggcacgctcgacctggaacacttcctgctgcgcatggtcgaa
ctcggctattcgcgcgtggaacgtgtcgaaacgcggggcgagatgagcgtgcgcggcgga
atcgtcgactttttcccgacgacgtccgcgcttgcctaccggatcgaactgttcgacgac
gaagtggactcgatccgcacgttcgacccggaagaccaacgttcgatcgataaagtgaaa
agcgtccgtatccgtccgagtcgcgagcttgtcgcaagcggcaagcgtatgtcccaggcg
gccgatgccgcggcggagctgctggagaagcagttggagcgcatgaccgaccgcaaagcc
aaaacggcgctgcagcaagaaatcggccgggagatcgaactgctgcgccagcagatccat
tttccggaaatgtacaaatacgtctccctgatctacccggaacgccggacgctgtacgat
tacatgccggacgacacgctgctgatgatggaagagccttcgcgcctgctcgacacagcc
gcgcagctcgaacgggacgaagccgaatggaacctgcacctgctgcagagcggcaaaagc
ctgccggacctgccgcttgcgctcgaaggcgacacggccatctaccagcgccccttccag
acgctgttcctgtcgctgttcgtccgccagattccgcgcacccatccggggcaggtcgtc
aacgttgtcagccggacgatgcaggacttccacgggcagatgaacgtgctgaaagccgag
atggaacgctggaaaaaatccaatatgcgcgtcatcatgctggccggcgacgacgaacgg
gccgaacgcatccgccaggtgctcgaagactacgagatcgagacgccggagattatgcgc
ggccatctgcagggcggcttcgagctgccttccgcccatctcgtcgtcattacggaaggc
gaactgttcgcccagaagcagcgcaaagtgcgcaaaagcacgtccacgaagcagatcgac
aacgccgagcgtatcaaaagctataccgagctgaaagtcggcgactacgtcgtgcaccaa
aaccacggtatcggcaaatacctcggcatcggcacgctcgaagtcggcggcatccataaa
gactacatgcatatcatgtacgccggcggcgacaagctgtccgtaccgatcgaacagatc
gacctgatccagaagtacgtcggcgccgaagacaaagagccgaaagtgtacaagctgggc
ggcaacgagtggacgagagtgaagaccaaagtccgttcgtccgtgcaggacatcgccgac
gacctcatcaagctgtacgcggagcgtcaggcttccgccgggtacagcttcgacaaggat
acgccggaccagaacgatttcgaaaacacgttcccttacgaagagacgcgcgaccagctg
cgggcgatcgaagagatcaagggcgacatggagatgacccgtccgatggaccgcctgctg
tgcggagacgtcggttacggcaagacggaagtcgcgatccgcgcggcgttcaaggcggcg
atcgaaggcaagcaggtcgcgatcctcgtgccgacgaccattttggcgcagcagcattac
gagacgttccgggaacgtttcgaagggtatccgttcaatatcggcgtcctcagccgtttc
cgctcgcgcaaagaacagaacgagacgatcaagggcgtcaagcagggcacgatcgacgtc
atcatcggcacgcaccgcatcctgtcgcaggatctcgtgttcaaggacctcggcctgctg
atcgtcgacgaagagcagcggttcggcgtgacgcacaaggaaaagctcaagcggctcaag
acgaacgtggacgtactgacgctgacggcgacgccgattccgcgtacgctgcacatgtcc
atgctgggcgtacgggatctgtcggttatcgagacgccgccggagaaccgtttcccggtg
cagacgtacgtggtcgaatacagcccgacgctcgtgcgcgaagcgatcgaacgggagctc
gcgcgcggcggacaggtgtactacctgtacaaccgcgtgcagggcatccacgagaaggcg
gcggaaatttccgagctcgtgccggacgcgcgcgtcagcgtgggtcacgggcagatgagc
gaacaggaactggagcggacgatcctcgacttcctcgaaggcgaatcggacgtgctcgtc
agcacgagcatcatcgagacgggcgtggacattccgaacgtcaatacgctgatcgtgcac
gacgcggacaagatgggcctgtcgcagctgtaccagatgcgcgggcgtgtcggccgttcc
aaccggatcgcgtatgcgtatttctcttatcaaaaagacaaggtgctgaccgaagtcgcc
gagaaacgcctgcagtcgatcaaggaattcacggaactcggttccggcttcaagatcgcc
atgcgcgacttgtcgattcgcggcgcgggcaatctgctcggcgcggaacagtccggcttc
atcgcgtcggtcggattcgacttgtactcgcagatgctggccgaagagatccagaagcgc
aaaatctcgatgctcggcgaagcgccggcggaagacaagcactggagcacgatgatcgac
ctgtcgatcgacgcgtacctgccttcggattacatttacgacagcatccagaagatcgag
atttacaaaaaggtcgccgcggcgaccaccttcgaagaagtgctcgaactcgaagacgag
ctgcttgaccggttcggcgaactgccggaagcggtcgtgcgcctgatgcaggtcgcgcgc
ttcaaaatttacggccggacgtacggcatcgagagcatcgcacgaagaggagacgatctt
ctcgtcacgttctacgaaggacaggagaaagcggccgatccttccaaactcgcgcaagtt
ggaaatcagttcgaaagcagtgtacaatttaagcagggtacgcctcttgcgttccaaatc
aaaggcaggagcctgccggaatccgagcgtttagggacgctggaacgggttctggatgcc
ctccaacaagcgttcaaatcgaagggagaacttcatgatgcagtcaagtcatag
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