Saccharibacillus brassicae: FFV09_12115
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Entry
FFV09_12115 CDS
T06082
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
saca
Saccharibacillus brassicae
Pathway
saca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FFV09_12115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saca03019
]
FFV09_12115
Enzymes [BR:
saca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FFV09_12115
Messenger RNA biogenesis [BR:
saca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FFV09_12115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25_NTPase-like
Utp25_C
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDH21520
UniProt:
A0A4Y6UY61
LinkDB
All DBs
Position
complement(2892309..2893973)
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AA seq
554 aa
AA seq
DB search
MTFNDLNLIPSILKALQKENYTTPTPIQQQAIPAALEGRDVLGCAQTGTGKTAAFSLPII
QRLSAKAPAGNKRPIRSLILTPTRELAIQIYDNIRAYSLYTELRSQVIVGGVSQTPQERE
LQRGTDILIATPGRLLDLINQKHVNLDSVEILVLDEADRMLDMGFIRDVQKIIARIPAKK
QTLFFSATMPREIADLVNSLLVNPLKVEITPVSSTVDRIRQALYRVDKPNKQKLLTDILK
DTSIESALVFTRTKHGANRVARLLDRSGISAQAIHGDKSQNARQAALSNFKNGATRVLVA
TDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGRDGISISFCETEELPYLKDIQ
KLIGKTIPEIKDHPYPMTGATASDDEPAPQGGQGGGRGRAKGGAQPAGAKNAARGGSQPA
GAKSPARPSAKQPAAKAPAKNGGQPAAAKPAAKADAQPSAPKSRPAGSGQPVRANGKPAG
AAQAGGEANRSRPASKPHSGPRAGADGKRPRTGGRPQPGTAASARSTSNQKWKDGQWAAE
TLYRSSFGLSGDKA
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaacgatttgaacctgattccttccattctcaaagccctgcaaaaagaaaac
tacaccactccgacgccgatccagcagcaggcgattcctgccgccctggaaggacgcgac
gtgctgggctgcgcccagaccggtaccggcaagacggcggctttctcgctgccgatcatc
cagcgtctgtcggccaaagcgcctgccggcaacaaacgtccgatccgttcgctgatcctg
acgccgacgcgcgagctggcgattcagatctacgacaatatccgggcttacagcctgtat
accgagctgcgcagccaggttatcgtcggcggcgtctcgcagactccgcaggagcgcgaa
ctgcagcgcggcaccgatattctcatcgcgaccccgggccgcctgctcgacctgatcaac
cagaagcacgtcaacctggattcggtcgaaatcctcgtgctcgacgaagccgaccggatg
ctcgacatgggctttatccgcgacgtgcagaagatcatcgcgagaattccggccaaaaag
cagacgttgttcttctcggccacgatgccgcgcgagatcgccgatctcgtcaattcgctg
ctcgtcaatccgctcaaggtcgaaattacgccggtctcttcgacggtggaccggattcgc
caagccctataccgggtcgacaagccgaacaagcagaagctgctgaccgacatcctgaag
gacacgtcgatcgagtccgccctcgtgttcacacgcacgaaacacggcgccaaccgcgtc
gcgcgcctgcttgaccgctccggcatctcggcgcaggcgattcacggcgacaagtcgcag
aacgcccgccaggccgcgctgagcaacttcaagaacggcgcgacgcgcgtgctggtcgcg
accgacatcgccgcccgcggcatcgacatcgacgagctgtcgcacgtcatcaacttcaac
ctgccgaacattccggagacttacgtgcaccggattggccgtaccggccgcgccggacgg
gacggcatctccatttcgttctgcgaaacggaagaactgccatacctcaaagacatccag
aagctgatcggcaaaaccattccggaaatcaaggatcatccttatccgatgacaggcgcc
accgcttccgacgacgagcctgccccgcagggcggacaaggcggcggacgcggtcgcgcc
aaaggcggcgcgcagcctgccggcgccaagaacgcggcccgcggcggctcgcagccggcc
ggtgccaaaagcccggcccgcccttccgcgaagcagccggcggctaaagcgccggccaaa
aacggcggccagccggctgccgccaagcctgcggccaaggccgacgcgcagccaagcgcg
ccgaaaagccgcccggccggctccggccagccggtccgcgcgaacggcaagcctgccggc
gctgcgcaagccggcggcgaagcgaaccgcagccgcccggcgagcaagccgcacagcggc
cctcgcgcaggcgcggacggcaagcgcccccgcacgggcggacgcccgcagccgggcacc
gcagcttccgcgcgttccacgagcaaccagaagtggaaagacggccaatgggcggccgag
accctgtaccgctccagcttcggcctgtcgggcgacaaagcgtaa
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