Saccharibacillus brassicae: FFV09_14455
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Entry
FFV09_14455 CDS
T06082
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
saca
Saccharibacillus brassicae
Brite
KEGG Orthology (KO) [BR:
saca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
saca03009
]
FFV09_14455 (rlmD)
Enzymes [BR:
saca01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FFV09_14455 (rlmD)
Ribosome biogenesis [BR:
saca03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FFV09_14455 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_15
MTS
PrmA
TRM5-TYW2_MTfase
Methyltransf_11
Methyltransf_32
N6_N4_Mtase
UPF0020
Methyltransf_12
Motif
Other DBs
NCBI-ProteinID:
QDH21930
UniProt:
A0A4Y6UZB2
LinkDB
All DBs
Position
3479469..3481448
Genome browser
AA seq
659 aa
AA seq
DB search
MNKNNSSRGSAGKSGGQGRGGKSKPPVGSSAGGSRRGGAGRTNAGRGRGGARPEEEIEGL
PVAKNDEVNLDIIGMNHNGEGVGRADGYTLFVPGALPGEKISAKVINTKKQYGYAKMNLL
LQASPSRVEAPCEIFDRCGGCQIQHMDYPAQLEWKRQQVADSLQRIGKLNVRAFGAPSAG
EASHGAEAGEPLEGDTRVSADTAEAGAHAAGPGEAGRPGDAAYEVSPAAAESASSGSLAA
GYAPEASSGQPLPALEAAAFGGGEGRENGPAPAGGEAAEAGAPGALAGAGGAQSADAAAQ
EAAAPVSGADAAGEEALGVLVPPTLGMSDPWRYRNKAQVPMGEEKGRLIGGFYARGTHRI
VDMETCIIQHEANDEMVETVKAIGRELGITAYDEETGRGLLRHVVVKVAFSTGEKMVVLV
TNSERLPKSEQWIAAIRERVPGVQSICHNANMRQTNVIFGETTTVLWGQEVIHDYIGDIK
FAISARSFYQVNPAQTEVLYGKTLEYAGLTGEETVIDAYCGIGTISLFLAQKAKRVYGVE
IVKEAIEDARKNAEINGITNAEFEVGASEDVIPRWREQGITPDVIVVDPPRKGCDIRLLE
TIIEMKPQRVVYVSCNPATLARDLRVLEDGGFKTTKVQPVDMFPQTVHVEAVALLVRQD
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaaacaacagcagccgcggcagcgcgggcaaaagcggcgggcaggggcgcgga
ggcaaaagcaaaccgccggtcggatcgtccgcaggcggcagccgccgcggcggcgcaggc
cggacgaacgccggccgcggacgcggcggagcgcgcccggaagaagaaatcgaaggactg
ccggtcgccaagaacgacgaagtcaatctcgacatcatcggcatgaaccataacggcgaa
ggcgtcggccgcgcggacggctacacgctgttcgtgccgggcgcactgccgggcgagaaa
atctcggccaaagtgatcaacaccaaaaagcagtacggctatgccaaaatgaacctgctg
ctgcaggccagcccttcgcgcgtcgaagcgccgtgcgaaatcttcgaccgctgcggcggc
tgccagatccagcatatggattatccggcgcagctcgaatggaagcggcagcaggtcgcg
gacagcctgcagcggatcggcaagctgaacgtgcgcgcgttcggcgctccgtccgcgggc
gaagcttcgcatggggcggaagcgggcgagccgcttgaaggcgacacgcgcgtgtccgcc
gatacggcggaagccggcgcccatgcggccggacccggcgaagcgggccggccgggcgat
gcggcttacgaagtgtcgccggccgccgcggagagcgcaagcagcggcagcctcgctgcc
ggctacgcgcccgaagcttcttcgggccagcctctgccggcacttgaggcagcggcattc
ggcggcggcgaaggccgcgagaacgggccggcgccggccggcggagaagctgcggaagcc
ggagcgccgggcgcgcttgcaggcgcgggcggcgcgcaaagcgccgacgcggccgcgcaa
gaggcggcggcgccggtctccggcgctgacgcagccggcgaagaagcgctcggcgtgctt
gtgccgccgacgctcggcatgagcgacccgtggcgctaccgcaacaaagcgcaggtgccg
atgggcgaagaaaaaggccgcctgatcggcggcttctacgcgcgcggcacccaccgcatc
gtcgatatggagacgtgcatcatccagcatgaagccaacgacgagatggtcgagaccgtc
aaagcgatcggccgcgagctgggcattaccgcgtatgacgaagagaccggccgcggcctg
ctgcggcatgtcgtcgtcaaagtcgctttttcaaccggcgagaaaatggtcgtactcgtt
acgaacagcgagcggctgcccaagtccgagcagtggatcgccgcgatccgcgagcgcgtc
cccggcgtgcagagcatctgccataacgccaacatgcgccagacgaacgtcattttcgga
gagacgacgaccgtcctgtggggccaggaagtcattcacgattacatcggcgacatcaag
ttcgcgatctctgcccgctccttctatcaggtgaatccggcccagaccgaagtgctgtac
ggcaaaacgctggagtacgccggcctgaccggcgaagagaccgtgatcgacgcctactgc
ggcatcggcaccatctccttgttcctcgcgcagaaagcgaagcgcgtctacggcgtcgag
atcgtcaaggaagcgatcgaagacgcccgcaaaaacgccgagatcaacggcatcaccaac
gccgaattcgaagtcggcgcgtccgaagacgtcatcccccgctggcgcgagcagggcatc
acgcccgacgtcatcgtcgtcgatcccccgcgcaaaggctgcgacatccgcctgctggag
accatcatcgagatgaagccgcagcgcgtcgtctacgtctcctgcaacccggctacgctc
gcacgcgacctgcgcgtactggaagacggcggcttcaagacgacgaaagtacagccggta
gacatgttcccgcagacggtgcatgtggaggccgttgctttgctggtacggcaggactaa
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