KEGG   Saccharibacillus brassicae: FFV09_23180
Entry
FFV09_23180       CDS       T06082                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
saca  Saccharibacillus brassicae
Pathway
saca02024  Quorum sensing
saca03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:saca00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FFV09_23180 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    FFV09_23180 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:saca03019]
    FFV09_23180 (hfq)
   03036 Chromosome and associated proteins [BR:saca03036]
    FFV09_23180 (hfq)
Messenger RNA biogenesis [BR:saca03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     FFV09_23180 (hfq)
Chromosome and associated proteins [BR:saca03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    FFV09_23180 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1 DUF150_C
Other DBs
NCBI-ProteinID: QDH23509
UniProt: A0A4Y6V0F2
LinkDB
Position
complement(5505735..5505977)
AA seq 80 aa
MNKSINIQDTFLNQLRKENIPATVYLTNGFQIRGTIKAFDNFTIVIDSDGRQQMVYKHAI
STFMPQRNVSLAQPDSTSGE
NT seq 243 nt   +upstreamnt  +downstreamnt
atgaacaaatccattaatattcaagacacgttcctgaaccaactgcgcaaagagaatatc
cctgccacggtctatctgaccaacggatttcagattcggggcacgatcaaggctttcgat
aacttcacgatcgtgatcgacagcgacggacgccagcagatggtgtacaagcacgccatt
tcgacgtttatgccgcagcgcaacgtatccctcgcccagcccgacagcacgtccggcgaa
taa

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