Saccharibacillus brassicae: FFV09_23180
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Entry
FFV09_23180 CDS
T06082
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
saca
Saccharibacillus brassicae
Pathway
saca02024
Quorum sensing
saca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FFV09_23180 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
FFV09_23180 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saca03019
]
FFV09_23180 (hfq)
03036 Chromosome and associated proteins [BR:
saca03036
]
FFV09_23180 (hfq)
Messenger RNA biogenesis [BR:
saca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
FFV09_23180 (hfq)
Chromosome and associated proteins [BR:
saca03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
FFV09_23180 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
DUF150_C
Motif
Other DBs
NCBI-ProteinID:
QDH23509
UniProt:
A0A4Y6V0F2
LinkDB
All DBs
Position
complement(5505735..5505977)
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AA seq
80 aa
AA seq
DB search
MNKSINIQDTFLNQLRKENIPATVYLTNGFQIRGTIKAFDNFTIVIDSDGRQQMVYKHAI
STFMPQRNVSLAQPDSTSGE
NT seq
243 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaatccattaatattcaagacacgttcctgaaccaactgcgcaaagagaatatc
cctgccacggtctatctgaccaacggatttcagattcggggcacgatcaaggctttcgat
aacttcacgatcgtgatcgacagcgacggacgccagcagatggtgtacaagcacgccatt
tcgacgtttatgccgcagcgcaacgtatccctcgcccagcccgacagcacgtccggcgaa
taa
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