Saccharomonospora xinjiangensis: EYD13_02195
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Entry
EYD13_02195 CDS
T05928
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sacc
Saccharomonospora xinjiangensis
Pathway
sacc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sacc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EYD13_02195 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sacc03021
]
EYD13_02195 (rpoC)
03400 DNA repair and recombination proteins [BR:
sacc03400
]
EYD13_02195 (rpoC)
Enzymes [BR:
sacc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EYD13_02195 (rpoC)
Transcription machinery [BR:
sacc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EYD13_02195 (rpoC)
DNA repair and recombination proteins [BR:
sacc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EYD13_02195 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QBQ58822
LinkDB
All DBs
Position
446208..450119
Genome browser
AA seq
1303 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITGVNTELRHNDLPTLENEISVERKTIEARRDADIEQRAQKLEAD
LAELEAEGAKADVRRKVKEGGEREMRQIRDRAQRELDRLEEVWTTFTKLEPRQLVVDEQL
YRELYDRYGEYFTGGMGAEAIQKLASEFDVDAEADSLRETIRSGKGQKKLRALKRLKVVA
AFQATGNDPRGMVLDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKDMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PQVWDVLEEVINGHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSANNILSPASGRPLAMPRLDMVTGLFHLTRLDENAKGAGT
AYSSPAEAVMAYDRKQLSLHAPVKIRIRDRQPNKQQEAALREKGWEPGQSWLAETTLGRV
LFNDLLPADYPFINEPLPKKRQAAIVNDLAERYSMTQVAQTLDGLKDAGFHWATRSGVTV
AISDVQVPPQKKEILDQYEARAAQVEKRYQRGQLSHTERNNELVKVWGQATEDVAKAMED
NLSDDNPIAMIVKSGAAGNMTQVRSLAGMRGLVSNPKGEYIPRPIKSNFREGLSVAEYFI
ATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTGRGIMMTVGDELPDGRLV
RAEHVETSVYARNLAVDAVDAQGNVVLNAGDDLGDPAIERLIQAGISRVKVRSVLTCESA
MGVCATCYGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPR
VTELFEARVPKGKAPIADVDGRVRIEETERFWKITLIPDDGSEEIVFDKLSKRQRLAITP
DGPLADGDHVKVGQPLLEGTPDPHEVLRVMGPREAQMHLVDEVQKVYRAQGVSIHDKHIE
VIVRQMLRRVTIIDSGSTEFLPGELPERTKFEHVNRQAVAEGGEPASGRPVLMGITKASL
TTDSWLSAASFQETTRVLTDAAINGRSDSLIGLKENVIIGKLIPAGTGINRYRNIQVQPT
EEARVAAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGRDFR
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaatttcttcgatgagctccggatcggtctcgcgacggccgacgacatc
cgccagtggtcctacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
ccggagaaggacgggctcttctgcgagaagatcttcgggcccacccgcgactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgtggtgtc
gaggtcacccgcgccaaggtgcgtcgtgagcggatgggccacatcgaactggccgcgccc
gtcacccacatctggtacttcaagggtgttccctcgcgcctcggctacctgctcgacctg
gcgccgaaggacctcgaaaagatcatctacttcgccgcgtacgtcatcaccggcgtgaac
accgagctgcggcacaacgacctcccgacgctggagaacgagatcagcgtcgagcggaag
accatcgaggcccgccgcgacgcggacatcgagcagcgcgcgcagaagctcgaagccgac
ctcgcggagctggaggccgagggcgccaaggccgacgttcgccgcaaggtgaaggagggc
ggcgagcgcgagatgcggcagatccgcgaccgcgcgcagcgggagctggaccgcctcgag
gaggtctggacgaccttcaccaagctggagccgcgccagctcgtcgtcgatgagcagctc
taccgcgagctgtacgaccgctacggcgagtacttcaccggcggcatgggcgccgaggcg
atccagaagctggccagcgagtttgatgtggacgccgaggccgactcgcttcgcgagacc
atccgcagcggcaagggccagaagaagctgcgcgcgctgaagcggctgaaggtcgtcgcg
gcgttccaggcgacaggcaacgacccgcgtggcatggtgctcgacgccatccccgtgatc
ccgccggagctgcgcccgatggtgcagctcgacggtggccgtttcgccacgtccgacctc
aacgacctgtaccggcgcgtcatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggcgctcccgagatcatcgtcaacaacgagaagcgcatgcttcaggaagccgttgacgcg
ctgttcgacaacggtcgccgtggtcgtccggtgacggggccgggcaaccgcccgctgaag
tcgctgtccgatctgctcaagggcaagcagggccggttccgtcagaacctgctcggtaag
cgcgttgactactccggccgttcggtgatcatcgtcggtccgcagctgaagctgcaccag
tgcggtctgcccaaggacatggcactcgagctgttcaagccgttcgtcatgaagcggctt
gtcgatctcaaccacgcgcagaacatcaagtccgcgaagcggatggtcgagcgcgcccgc
ccgcaggtgtgggacgtgctggaagaggtcatcaacggccaccccgtgctgctcaaccgt
gctcccacgctgcaccgcctcggtattcaggcgttcgagccgcagctcgtggaaggcaag
gccattcagctgcacccgctcgtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcgcaggccgaggcacgcatcctgatgctg
tcggcgaacaacatcctctcgccggcgtcgggtcgtccgctcgccatgccgcgactggac
atggtgaccgggctgttccacctcacgaggctcgacgagaacgcgaagggtgcgggcacg
gcgtactcgtcgcctgccgaggcggtcatggcctacgaccgtaagcagctctcgctgcac
gcccctgtgaagattcgcatccgcgaccggcagccgaacaagcagcaggaagcggctctt
cgcgagaagggctgggagccgggccagtcgtggctcgccgagacaaccctcggccgtgtg
ctgttcaacgacctgctgcccgcggactacccgttcatcaacgagccgctgccgaagaag
cggcaggccgcgatcgtcaacgacctcgcggagcggtactccatgacgcaggtcgcgcag
acgctcgacgggctcaaggacgccggtttccactgggccacccgctccggtgtcacggtg
gcgatctccgacgtccaggtgccgccgcagaagaaggagatcctcgaccagtacgaggca
agggccgcccaggtggagaagcgctaccagcgtggtcagctctcccacaccgagcggaac
aacgaactcgtcaaggtgtggggccaggcgacggaggacgtcgccaaggccatggaggac
aacctctccgacgacaacccgatcgccatgatcgtgaagtccggtgcggcaggcaacatg
acccaggtgcggtcgctggccggtatgcgtggtctggtgtccaacccgaagggtgagtac
atcccccggccgatcaagtccaacttccgtgagggactgtcggtggcggagtacttcatc
gccacgcacggtgcccgtaagggtctggccgacaccgcgctgcgtaccgccgactcgggt
tacctcacccgccgtctggtggacgtgtcgcaggacgtcatcgtgcgcgagaccgactgc
ggcaccggcaggggcatcatgatgaccgtcggggacgagctgcccgacggccgccttgtg
cgcgccgagcacgtggagaccagcgtctacgcccgcaacctcgccgttgacgcggtggac
gcgcagggcaacgtggtgctcaacgcgggtgacgacctcggtgaccccgccatcgagcgg
ctcatccaggcaggcatcagcagggtcaaggttcgcagcgtgctgacctgcgagtcggcc
atgggcgtgtgcgccacctgctacggccgctcgatggccaccggcaagctggtggacgtc
ggcgaggccgtcggtatcgtcgcagcccagtcgatcggtgagccgggtacgcagctgacg
atgcgtacgttccaccagggtggtgtcgccggtgacgacatcaccacgggtctgccccgt
gtcaccgagctgttcgaggcccgcgtgccgaagggcaaggcgcccatcgccgacgtggac
ggccgcgtgcgcatcgaggagaccgagcggttctggaagatcacgctcatcccggacgac
ggcagcgaggagatcgtcttcgacaagctgtcgaagcggcagcggctcgcgatcacgccc
gacggcccgctggccgacggcgaccacgtcaaggtcggtcagccgttgctggaaggcacg
ccggacccgcacgaggtgctgcgtgtgatgggcccccgcgaggcgcagatgcacctcgtg
gacgaggtccagaaggtgtaccgcgcgcagggtgtgtcgatccacgacaagcacatcgag
gtcatcgtgcggcagatgctgcgccgcgtgacgatcatcgactccggttcgaccgagttc
ctgccgggcgagctgcccgagcgcaccaagttcgagcacgtcaacaggcaggcggttgcc
gagggtggcgagcctgcctccggtcgccccgtgctgatgggtatcacgaaggcgtcgctg
accaccgactcgtggttgtcggctgcctcgttccaggagacgacgcgcgtgctcacggac
gcggccatcaacggtcgcagtgactcgctgatcggcctcaaggagaacgtgatcatcggt
aagttgatcccggcaggtacgggcatcaaccggtaccgcaacattcaggtgcagccgacc
gaggaggccagggtcgccgcgtacgcgatcccgtcctacgacgacggctactacacgcct
gacgtgttcggcaccggcaccggtgcggctgtcccgctggacgactacgacttcggtcgc
gacttccggtag
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