Saccharomonospora xinjiangensis: EYD13_16530
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Entry
EYD13_16530 CDS
T05928
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
sacc
Saccharomonospora xinjiangensis
Pathway
sacc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sacc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EYD13_16530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sacc03021
]
EYD13_16530
03019 Messenger RNA biogenesis [BR:
sacc03019
]
EYD13_16530
Transcription machinery [BR:
sacc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
EYD13_16530
Messenger RNA biogenesis [BR:
sacc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EYD13_16530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
QBQ61651
LinkDB
All DBs
Position
complement(3571234..3573297)
Genome browser
AA seq
687 aa
AA seq
DB search
MSNTDLLSGDETQAAPSASSDSGEQTPQTNGAGTAPKRRPGGLSGMVIAELRALATELGI
GDTTGMRKGDLIAAIRERQGKTKRAKSTAKDGATAGAEATETSETSAPAREPAAALDGHG
QPRQSGEAGDAGDKRQAKRGDASRREAGAESAADGGADSARNGGGRNEGGNGAARDAKDN
VKDNAEAKVSGDTQDDGGNRPNRRRRGSGRSGANAEGGAQQRSDGESGQRDGGEKDGGSD
SGRSDGKQAGGQQQRGGNAGGGQNKQNNQNNQGDDDDERGGRRSKRFRDRRRRGRGEGGG
TETDIKEDDVLLPVAGILDVLENYAFVRTSGYLPGPNDVYVSLSLVRKYGLRRGDAITGV
VKQPREGEQQRQKFNPLVRVDSINGLDPEVAKKRPEFHKLTPLYPNERLRLETTPNKLTT
RVIDLVMPVGKGQRALIVSPPKAGKTTIMQDIANAITTNNPECHLMVVLVDERPEEVTDM
QRSVKGEVIASTFDRPPSDHTSVAELSIERAKRLVEMGHDVVVLLDSITRLGRAYNLAAP
ASGRILSGGVDSTALFPPKRFLGAARNIEGGGSLTIFATAMVETGSTGDTVIFEEFKGTG
NAELKLDRKIAERRVFPAVDVNPSGTRKEELLLSPDELAVTHKLHRVLHALDSQQAIDLL
LDRLRKTKTNIEFLMQVSKTAPGSDDD
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaacaccgatctgttgagcggcgacgagacccaggcagcaccgtctgcatcgtcc
gactcgggtgagcagacgccgcagaccaacggcgcgggaacggccccgaagcggcgtccc
ggcggcctgtcgggcatggtgatcgccgagcttcgcgcactcgccaccgagttgggcatc
ggcgacaccacggggatgcgcaagggcgacctgatcgcggccatccgcgagcgtcagggc
aagacgaagcgtgcgaaatcgacggccaaggacggcgccacagcgggtgccgaggccacg
gaaacctctgagacctctgcgcctgcccgtgagccggccgcagctctcgacggtcacggc
caaccccgtcagtccggcgaggccggggatgccggtgacaagcggcaggccaagcgcggc
gacgccagtcggcgcgaggctggtgccgaaagcgcggctgacggcggcgccgactccgcg
aggaacggcggcggcaggaacgaaggtggcaacggtgccgccagggacgccaaggacaac
gtgaaggacaacgcggaagccaaggtctccggagacacgcaggacgacggcggcaacagg
ccgaaccggcgcaggcgcggctccggcaggtccggcgcgaatgccgaaggcggcgcccag
cagcgttccgacggcgagtccggtcagcgtgatggcggggagaaggacggtgggtccgac
tccggcaggtccgacggcaagcaggcgggcggccagcagcagcgcggcggcaacgcgggc
ggtggccagaacaagcagaacaaccagaacaaccagggcgacgacgacgacgagcggggt
ggccgtcgcagcaagcgcttccgtgaccgccgtcgccgcggtcgtggtgaaggcggcggc
acggagaccgatatcaaggaagacgacgttctgcttcccgtcgcgggcatcctcgacgtg
ctggagaactacgcgttcgtccggacctccggctatcttcccggccccaacgacgtctac
gtctcgctgtcactggtgcgcaagtacggacttcgccgtggtgacgccatcaccggtgtc
gtgaagcagccgcgtgagggcgagcagcagcgccagaagttcaacccgctcgtgcgggtg
gactcgatcaacgggctcgaccccgaggtcgcgaagaagcggccggagttccacaagctc
acgccgctgtacccgaacgagcggttgaggctggaaacgacgccgaacaagctgaccacc
cgcgtcatcgacctggtgatgccggtcggcaaggggcagcgcgcgctgatcgtctccccg
cccaaggccggcaagacgacgatcatgcaggacatcgccaacgcgatcacgacgaacaac
cccgaatgccacctcatggtggtcctcgtcgatgagcggcccgaagaggtcaccgacatg
cagcggtcggtgaagggcgaggtcatcgcctccaccttcgatcgcccgccgtcggaccac
acgtcggtggccgagctgtccatcgagcgggccaagcgcctcgtggagatggggcacgac
gtcgtcgtgctgctcgactcgatcacccggctgggcagggcctacaacctggcggctccg
gcttcggggcgcatcctgtccggtggtgtcgattccacggcgctgttcccgccgaagcgg
ttcctcggcgcggcgcgcaacatcgagggcggcggatcactcacgatcttcgccaccgcg
atggtcgagacgggctccaccggtgacacggtgatcttcgaggagttcaagggcaccggc
aacgccgagctcaagctcgaccgcaagatcgccgagcgcagggtgttccccgccgtggac
gtcaacccgtccggcacccgcaaggaggagttgctgctctcgcccgacgagctggcagtg
acccacaagttgcacagggtgctgcacgcgctcgactcgcagcaggccatcgatctgctg
ctcgaccggctgcggaagacgaagaccaacatcgagttcctgatgcaggtctcgaagacc
gcgcccggctccgacgacgactga
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