Sulfodiicoccus acidiphilus: HS1genome_0269
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Entry
HS1genome_0269 CDS
T05813
Name
(GenBank) exosome complex exonuclease Rrp41
KO
K11600
exosome complex component RRP41
Organism
sacd
Sulfodiicoccus acidiphilus
Pathway
sacd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sacd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HS1genome_0269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sacd03019
]
HS1genome_0269
Messenger RNA biogenesis [BR:
sacd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
HS1genome_0269
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
HS1genome_0269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
BBD71880
UniProt:
A0A348B128
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All DBs
Position
251418..252071
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AA seq
217 aa
AA seq
DB search
MKMEVGVLKNANGSAIVEMGRTKVLTAVYGPREMHPRHLALPDRAVLRVRYHMTPFSTDE
RKNPALSRREIEISKVIREALEASILVETFPRTTIDVFSEVLQADAGTRLVALMSASLAV
ADAGIPMRDLIAGVAVGKADGTLVLDLNEEEDMWGEADMPIAMMPSLSQVALLQLNGSLS
GGEFRAALQMASKGIDELYRMEKEALMSKYSAYKEVN
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
gtgaagatggaggtgggagtactaaagaacgccaacggatcggcaatagtcgaaatgggt
aggactaaggtgttgactgccgtctacggtcccagagaaatgcatccgaggcatttggct
ctccctgatagggcagtcctcagagtgcgataccacatgacacctttctccacagatgaa
aggaagaacccagccctcagcaggagggaaatagagatatctaaggtaatacgcgaggcc
ctggaggcatctatcttagtagagaccttccctaggaccactatagacgtgttctctgaa
gtcctacaagccgatgctgggacgagattagtggctttgatgtcagcctcactggccgtg
gcagatgcaggaatcccgatgagggacctaatagccggtgtcgctgtaggaaaggctgat
ggtaccttggtcttagatctgaacgaggaggaagatatgtggggagaggccgatatgccc
atcgcgatgatgccgtccctctctcaggtggcattacttcagctcaacggaagcctttcg
gggggcgagtttagggcggccctccaaatggcgagcaaaggaatcgatgaactatatagg
atggaaaaagaagccctaatgtcaaagtactcggcttacaaggaggtgaattga
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