Allosaccharopolyspora coralli: GIY23_03505
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Entry
GIY23_03505 CDS
T06288
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sace
Allosaccharopolyspora coralli
Pathway
sace03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sace00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GIY23_03505 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sace03400
]
GIY23_03505 (mfd)
Enzymes [BR:
sace01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GIY23_03505 (mfd)
DNA repair and recombination proteins [BR:
sace03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GIY23_03505 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
UB2H
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QGK68741
UniProt:
A0A5Q3Q2F1
LinkDB
All DBs
Position
732947..736564
Genome browser
AA seq
1205 aa
AA seq
DB search
MPETGSPVAPLAGLLDPLLSDATFRTVVESAGQPHLVLEGPISARPLVAASVAAGAVRPA
LVVTATGREADEVATAVSGLIGSGGVEVLPSWETLPHERLSPRADTIGGRLAVLRRLAHP
EEHPQGSIRVLVTTVRSLIQPIAPGLGELRPVRLAVEEEHDFEELVERLAGLAYTRVDMV
EKRGEFAVRGGIVDVFPPTEEHPLRVEFWGDEVTEIRPFSVADQRSLDAEADEDAVLFAP
ACRELLITDSVRERATKLATEHEADAHLTDMLGKISGGVPVEGMEALIPALCDGEMQLLT
DLVPECTHVLLADPEKVRARAADLVRTGEEFLEASWMVAGDGGRAPIDLGASAYRALGEV
SAYTTGLGLPWWQLTQLSSDADIADGAADRTVVRLPLKQVESYRGDVERAFTDLRAHTAS
GGAAVLVVAGTGTAQRAVEQMREAELPVRLADGLTEGPESGVITVVRGGLEDGFLAPDVA
LVVLTETDLTGDRGAPSTRDMRRMPSKRRNAVDPLALKAGDFVVHEQHGIGKYVEMVQRT
VSGATREYLVLEYASSKRGQPGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTKAK
ARKAVKEIAAELVQLYAARQSAPGHAYGTDTPWQRELEDAFPFTETADQMGAIDEVKGDM
QSAVPMDRVICGDVGYGKTEIAVRAAFKAVQEGKQVAVLVPTTLLAQQHLTTFTDRMRSF
PVTIRGLSRFTHLPDAEQVISGLAKGEVDIVIGTHRLLQTGVRYKDLGLVIVDEEQRFGV
EHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGAYDEK
QVAAAIRRELLRDGQVFFVHNRVQSIEKAARHLREIVPEARIVTAHGQMNEDRLEKIIQG
FWEREHDVLVCTTIVETGLDISNANTLIVERSDTLGLSQLHQLRGRVGRARERGYAYFLY
PSDKPLTDTAHDRLATIAQNSELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYM
RLVGEAVEAFKQHAGAEPADGETELAEVRVDLPVDAHIPHDYVAGERLRLEAYRKIAAAA
DADTLDAVRGELHDRYGPLPEPVERLLKVATFRQTCRRHGVTEVTLQGTSLRVAPLDLSD
SQQMRLKRLYPKAVYKAAVRTVSVPHPTEGAAGGRIGAPKLRDDALLEWCTELLEALAGK
PAPVG
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagaccggctccccggtcgcacccctcgcggggttgctcgacccgttgctctcc
gacgcgacgttccgcaccgtcgtggagtccgcgggacaaccgcacctcgtcctggaaggg
ccgatttcggcgcgcccgctggtcgcggcgagcgtggccgccggggccgtacgtccggcg
ctcgtggtcaccgccaccggcagggaggccgacgaggtcgccaccgcggtctccggcctg
atcgggtccggtggtgtcgaggtgctgccctcgtgggagacgctgccgcacgagcgactc
tccccacgcgcggacacgatcggcgggcggctggcggtgctgcgtcggctcgcgcatccc
gaggagcatccgcagggctcgatccgggtactggtcaccaccgtccgcagcctcattcag
ccgatcgcccccggactcggcgaactgcggccggtgcgactcgccgtcgaggaggagcac
gacttcgaggagctcgtcgagcgcctggccgggctcgcctacacgcgcgtggacatggtc
gagaagcgcggcgagttcgcggtgcgcggcggcatcgtggacgtgttcccgccgaccgag
gaacacccgctgcgggtggagttctggggcgacgaggtcaccgagatccgcccgttctcg
gtcgccgaccagcgttccctcgacgccgaggcggacgaggacgccgtcttgttcgcccct
gcttgccgcgagctgctgatcaccgactcggtgcgggaacgggccacgaaactcgccacc
gagcacgaggcggacgcgcacctgaccgacatgctcggcaagatctccggcggggtcccg
gtggagggcatggaggccctgatccccgcgctctgcgacggtgagatgcagctgctgacg
gatctggtgccggagtgcacgcacgtgctgctcgccgacccggagaaggttcgcgcgcgt
gcggccgacctcgtgcgcaccggcgaggagttcctcgaggcctcgtggatggtcgccggt
gacggcgggcgagcaccgatcgacctcggtgcctccgcgtaccgggcgctgggcgaggtc
tcggcgtacacgaccggtctggggttgccgtggtggcagctcacccagctcagcagcgat
gccgacatcgccgacggcgcggcggaccggaccgtggtgcggttgccgctcaagcaggtc
gagtcctaccgcggcgacgtcgagcgggcgttcaccgatcttcgcgcgcacaccgcctcc
ggcggcgcggcagtgctcgtcgtcgcgggcacgggcaccgcgcagcgggcggtcgagcag
atgcgggaggccgaactgccggtgcggctcgccgacggcctcaccgagggccccgagagc
ggagtgatcacggtggtgcgcggcgggctcgaggacggcttcctcgctcccgacgtggcg
ctggtcgtgctcaccgagaccgacctcaccggtgaccggggtgcaccgtcgacccgggac
atgcgccggatgccgtcgaagcggcgcaacgcggtcgatccgctcgcgctgaaggcgggc
gacttcgtcgtccacgagcagcacggcatcggcaagtacgtggagatggtgcagcgcacg
gtcagcggcgcgacccgcgagtacctggtgctggaatacgcgtcgtcgaagcgcggccag
cccggcgaccggttgttcgtccccaccgaccaactcgacgaggtctcccgctacgtcggc
ggtgagctgcccacgctgaacaagctcggcggctccgactggaagaacaccaaggccaag
gcgcgcaaggcggtcaaggagatcgccgccgagctggtccagctctacgccgcccggcag
tccgcgcccggccacgcctacggcacggacaccccgtggcagcgggagctggaggacgcg
ttcccgttcaccgagaccgccgatcagatgggcgccatcgacgaggtcaagggcgacatg
cagagcgccgttccgatggaccgggtgatctgcggcgacgtcggctacggcaagaccgag
atcgcggtacgcgccgcgttcaaggcggtccaggagggcaagcaggtcgccgtgttggtg
ccgacgaccctgctggcccaacagcacctcaccaccttcaccgaccggatgcgctcgttc
ccggtcaccatccgggggctgtcccggttcacgcacctgcccgatgccgagcaggtgatc
agcgggctcgccaagggtgaggtggacatcgtcatcggcacgcaccggctgctgcagact
ggtgtgcgctacaaggacctcgggctcgtcatcgtcgacgaggagcagcgcttcggtgtc
gagcacaaggagcacatcaaggcactgcgcacgcacgtcgacgtgctgacgatgtcggcg
acgccgatcccgcgcacgctggagatgagcatggcgggcatccgggagatgtcgaccatc
ctgactccgccggaggagcggcatccggtgttgacctacgtcggcgcctacgacgagaag
caggtcgccgccgcgatccggcgggagctgctgcgcgacggccaggtgttcttcgtgcac
aaccgggtccagtccatcgagaaggccgcacgtcacctgcgcgagatcgtgccggaggcc
cgcatcgtcacggcgcacggccagatgaacgaggaccggctggaaaagatcatccagggc
ttctgggagcgcgaacacgacgtgctggtgtgcaccacgatcgtcgagaccggcctggac
atctccaacgcgaacaccctcatcgtggaacgctccgacacgctcggcctctcccagttg
caccagctacggggcagggtcggccgtgcccgggagcgcggctacgcgtacttcctgtac
ccgagcgacaagccgctgaccgacaccgcgcacgaccggctggccacgatcgcgcagaac
tccgagctgggcgcgggcatggctgtggcgatgaaggacctcgagatccgcggcgcgggc
aacatcctcggcgcggagcagtccgggcacatcgccggcgtcgggttcgacctctacatg
cggctggtgggcgaggccgtcgaagcgttcaagcagcacgccggtgccgagccggcggac
ggggagaccgaactcgccgaggtccgggtggatctcccggtggacgcgcacattccgcac
gactacgtcgccggtgagcggttgcggctggaggcgtaccgcaagatcgcggcggcagcg
gacgcggacacgttggacgcggtgcggggcgaactgcacgaccgctacgggccgctgccg
gagccggtcgaacggttgctcaaggtcgccacgttccggcagacgtgccgcaggcacggg
gtcaccgaggtgacgttgcagggcacgtcgctgcgggtggcgccgctggatctgtccgac
tcgcagcagatgcggctcaagcggctctacccgaaggccgtgtacaaggcggctgtgcgc
acggtgtcggtcccgcacccgaccgaaggtgctgccgggggacgcatcggagcgccgaag
ctgcgggacgacgctctgctcgagtggtgcaccgaactgttggaggcgctcgcgggcaag
cccgcgcctgtcggctga
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