Allosaccharopolyspora coralli: GIY23_06435
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Entry
GIY23_06435 CDS
T06288
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sace
Allosaccharopolyspora coralli
Pathway
sace03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sace00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GIY23_06435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sace03019
]
GIY23_06435
03400 DNA repair and recombination proteins [BR:
sace03400
]
GIY23_06435
Enzymes [BR:
sace01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GIY23_06435
Messenger RNA biogenesis [BR:
sace03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GIY23_06435
DNA repair and recombination proteins [BR:
sace03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GIY23_06435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QGK69218
UniProt:
A0A5Q3Q3M9
LinkDB
All DBs
Position
complement(1349575..1351689)
Genome browser
AA seq
704 aa
AA seq
DB search
MDEAVLREQAEEHLRALAGPDATLREDQWSAIRALVLERSRALVVQRTGWGKSAVYFVAT
ALLRELGEGPTVIVSPLLALMRNQVEAAAAADVHAATINSANPQEWASIEEQVAVGEVDV
LLVSPERLNNPDFRDTVLPELTQSAGLLVVDEAHCISDWGHDFRPDYRRLRTLLAELPDG
VPVLATTATANDRVVADVSEQLLTGHEDDSSTVVLRGTLDRESLRLGVVSLPTTQARLAW
LAEHLGELPGSGIIYTLTVAATDEVSGFLRDQGFEVASYSGRTDPAERARAEDDLLQNRV
KALVATSALGMGFDKPDLGFVVHLGAPSSPIAYYQQIGRAGRGVERAEVLLMPGREDRDI
WSYFASMAFPPEPTVRAVLAALSEGGTLSTAALEPRVELNRSRLEMVLKVLDVDGAVRRV
KGGWEATGEQWSYDAERYGRIAQAREAEQQAMLDYVATTGCRMEFLRRQLDDPGAQPCGR
CDNCTGSPLSASVDERSVQAASDRLNRPGVEVTPRKMWPSGMAALGIDVAGKIPADEQAS
QGRALGRLTDIGWGNRLRDLLGTASPDQELPDDVFQACVQVLAAWDWEQRPVGVVSIGSR
TRPELVRSLASKIASVGRLPLLGEVDTDVSAPVRRATNSAQRVASVWNQFRVSDELASTL
FGVDGPVLLMDDLADTGWTVTVVSRMLRQSGAPAVLPFTLATAA
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtggacgaagccgtactgcgagaacaggccgaagagcacctccgcgccctcgccggtccc
gacgcgacgttgcgcgaggaccagtggagcgcgatccgagccctggtgctggaaagaagc
cgtgcgctggtggttcagcgcaccggctggggcaaatcggccgtgtacttcgtggcgacg
gccctgctccgcgagctgggcgaggggccgacggtgatcgtctcgccgctgctcgccctc
atgcgcaaccaggtcgaggcagccgctgcggcggacgtgcacgcggcgacgatcaactcg
gcgaacccgcaggagtgggcgtcgatcgaggagcaggtcgcggtcggcgaggtcgacgtc
ctgctggtgagcccggaacggttgaacaaccccgactttcgggacaccgtgctgcccgag
ctcacccagtccgctgggttgctggtggtcgacgaagcgcactgcatctccgactggggt
cacgacttccgcccggattaccgccggctgcgcacgctgctcgccgagctgccggacggc
gtcccggtcttggcgacgaccgcgaccgccaacgaccgcgtggtcgccgacgtctcggag
cagctgctcaccgggcacgaggacgacagctcgacggtggtgctacgggggaccctggac
cgggagagcctgcggctcggcgtcgtgtcgctgccgaccacacaagcccgcttggcgtgg
ctggccgagcatctgggcgagctgcccggctccggaatcatctacacgctcaccgtggcg
gcgaccgacgaggtctcgggtttcctgcgtgaccagggtttcgaggtcgcctcgtactcg
gggcgcaccgatccggcggagcgagcacgggcggaggacgatctgctccagaaccgggtc
aaggcgctggtcgcgacctcggcgttgggtatgggtttcgacaagccggacctcggattc
gtcgtgcatctgggtgcaccgtcctcccccatcgcctactaccagcagatcgggcgagcg
gggcgcggtgtcgagcgcgccgaggtgctactcatgccgggccgcgaggaccgcgacatc
tggagctacttcgcgtcgatggcgttcccgccggagccgacggtccgcgcggtactggca
gcactgtccgaaggcggcacgctgtccacggcggcgttggagcctcgggtcgagttgaac
cggtcccggctggagatggtgctcaaggtcctggacgtggacggtgcggtgcgccgggtc
aagggcggctgggaggcgaccggcgagcagtggtcctacgacgccgagcgctacggccgt
atcgcgcaggcccgcgaggccgaacagcaggcgatgctcgactatgtcgcgaccaccggt
tgccgcatggagtttctgcggcggcagttggacgacccgggcgcgcagccctgcggccgt
tgcgacaactgcacgggctcgccgctgtccgcgagcgtcgacgagcggtcggtgcaggca
gcctccgatcggctgaaccggcccggcgtggaggtcaccccacgcaagatgtggccgagt
ggcatggcggcgttggggatcgacgtcgccggcaagattcccgccgacgagcaggcgtcg
cagggccgtgcgctcggccggctgaccgatatcggctggggcaaccggctccgcgaccta
ctcggcaccgcgtcaccggatcaggaactgcccgacgacgtgttccaggcgtgtgtgcag
gttctcgcggcctgggactgggaacagcgacccgtgggtgtcgtctcgatcggctcacgg
acacgtcccgagctggtgcgcagcctcgcgtcgaagatcgcctcggtcggtcggctgccg
ttgctcggcgaggtcgacacggacgtgagcgctccggtgcgtcgtgcgacgaacagtgcc
cagcgcgtcgcgtcggtgtggaaccagttccgggtatcggacgagctggcgagcacgctg
ttcggtgtggacggcccggtgctgttgatggacgacctcgccgacaccggatggacagtc
accgtcgtgagccgcatgctccgccagtcgggagcccctgccgtcctgcccttcaccctc
gccaccgccgcgtga
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