Allosaccharopolyspora coralli: GIY23_16635
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Entry
GIY23_16635 CDS
T06288
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sace
Allosaccharopolyspora coralli
Pathway
sace03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sace00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GIY23_16635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sace03019
]
GIY23_16635
Messenger RNA biogenesis [BR:
sace03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GIY23_16635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
QGK70926
UniProt:
A0A5Q3QC35
LinkDB
All DBs
Position
complement(3569142..3570830)
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AA seq
562 aa
AA seq
DB search
MSQTSSEPPGPVPEGGMRVVALGGIGEVGRNMTVFEFDGRLLVVDCGVLFPEDDSPGVDL
ILPDFAYIEDRLDDIEALVLTHGHEDHIGAVPFLLKMRPDLPVIGSRFTLALLAAKCKEH
RLDPVLHEVAEGQSCQHGPFSLEFFAVNHSIPDALAVAVRTQAGVALHTGDIKLDQLPLD
GRLTDLAGFSRMGDEGVDLFLVDSTNAEVPGFVTPEREIGPVLDSVVGSATQRLIVACFA
SHVHRVQQVLDVAAKHGRKVCFVGRSMVRNMGIAGDLDLLRVPPGLIVDLDEALAMPEHL
VVFVSTGSQGEPLSALSRMARGEHRNIRIREGDTVVLASSLIPGNETAVFGVVNGLVRLG
AEVVHQGGAKVHVSGHASAGELLYLYNAVRPSNVMPVHGEWRHLRANAELARLTGVAADR
VVIAEDGVVVDLVDGIATRSGRVEVGHVYVDGLSVGDVGESTLSDRLILGEGGFISITVA
VEAATGRAVSAPKLSGRGFSDDPKALDEVLHLVEMELARTESDGITDTHRIAQSVRRVVG
KWVADTYRRRPMIVPNVVPVTA
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgagccagacgtcctccgaaccgccggggccggttcccgagggcggcatgcgcgtcgtc
gccctcggaggcatcggcgaagtcggccggaacatgacggtcttcgagttcgacggacgt
ctgctggtcgtcgactgcggcgtgctgtttcccgaggacgactcgccaggggtcgacctg
atcctgccggacttcgcctacatcgaggaccggctggacgacatcgaggcgttggtgctc
acgcacgggcacgaggatcacatcggtgcggtgccgttcctgttgaagatgcggccggac
cttccggtgatcggatcgcgcttcacgctggccctgttggccgcgaagtgcaaggaacac
cgcctcgaccccgtgttgcacgaggtcgccgagggccagagctgccagcacggcccgttc
tcgctggagttcttcgccgtcaaccattccatcccggacgcgttggcggtggccgtacgc
actcaggccggggtcgcgttgcacacgggggacatcaaactcgaccagctgccgctggac
ggcaggctcaccgacctcgccgggttctcgcggatgggagacgaaggcgtcgacctgttc
cttgtggactcgacgaacgccgaggttcccgggttcgtgacgcccgaacgtgagatcggc
ccggtgctcgacagtgtcgtcggctcggcgacgcagcggctcatcgtggcgtgtttcgcc
agccacgtgcaccgcgtgcagcaggtgctcgacgtggccgccaagcacggccgaaaggtg
tgcttcgtgggcaggtcgatggtgcgcaacatgggcatcgccggtgatctcgacctgttg
cgggtcccgccgggtctgatcgtcgatctcgacgaggcgttggcgatgcccgagcatctg
gtggtgttcgtctcgacggggtcgcagggtgagccgctctcggcgttgtcgcggatggcg
cgcggcgagcaccgcaacatccggatccgcgagggcgacacggtcgtgctcgcgagttcg
ctgattcccggtaacgagaccgccgtgttcggtgtcgtcaacggcctcgtacggctcggg
gccgaggtcgtgcaccagggcggcgcgaaggtgcacgtctccgggcacgcctcggcgggt
gaactgctgtacctgtacaacgcggtccggccgagcaacgtgatgcccgtgcacggcgag
tggcggcatctgcgggcgaacgctgagttggcgcggttgacgggcgtggccgcggaccgg
gtcgtcatcgccgaggacggtgtggtggtcgacctggtcgacggaatcgcgacgcggtcg
ggtcgggtcgaggtcggacacgtctatgtggacggtctgtcggtcggcgacgtcggcgag
tcgacgttgtcggaccggttgatcctcggcgagggcgggttcatctcgatcaccgtggcg
gtcgaggcagcgacggggcgcgcggtctcggcgccgaagctgtcgggccggggtttctcg
gacgatccgaaggccctggacgaggtcctgcacctggtcgagatggaactggcccgcacc
gagtcggacggcatcaccgacacgcaccggatcgcgcagtcggtccggcgcgtggtcggc
aagtgggtggccgacacctatcgtcgtcgtccgatgatcgtgcccaacgtcgtcccggtg
accgcctga
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