Allosaccharopolyspora coralli: GIY23_17295
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Entry
GIY23_17295 CDS
T06288
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sace
Allosaccharopolyspora coralli
Pathway
sace03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sace00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GIY23_17295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sace03019
]
GIY23_17295
03009 Ribosome biogenesis [BR:
sace03009
]
GIY23_17295
Enzymes [BR:
sace01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GIY23_17295
Messenger RNA biogenesis [BR:
sace03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GIY23_17295
Ribosome biogenesis [BR:
sace03009
]
Prokaryotic type
rRNA helicases
GIY23_17295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
AAA_19
UvrA_inter
adh_short
HEM4
Motif
Other DBs
NCBI-ProteinID:
QGK71043
UniProt:
A0A5Q3Q9K1
LinkDB
All DBs
Position
complement(3710096..3711808)
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AA seq
570 aa
AA seq
DB search
MPTFHELALDDRVLSSITEIGYETPSPIQEQTIPPLMEGRDVMGLAQTGTGKTAAFALPI
LSHLDMSAKKPQALVLAPTRELAIQVAEAFQKYAAHLPGFHVLPIYGGQSYGPQLAGLKR
GVQVVVGTPGRLIDHLDKGSLDLSELRMLVLDEADEMLRMGFIDDVERILQSVPDQRQVA
LFSATMPPAIRKISQSYLREPVEISVKTKTSTATNINQRHIPVRGPNKLDAITRILEVEP
FDAMIVFVRTKQATEEIAEKLQARGFSAAAINGDIAQAQRERTIGHLREGRLDILVATDV
AARGLDVERISHVLNYDIPHDSESYVHRIGRTGRAGRSGEAILFVSPRERHMLRSIEKAT
RQSIAQMELPTIEAVNDQRLQKFAQTITETLSAGGLETFQDLVRDYEQSHDVPALEIAAA
LARMAQGDRPLLLEPEPAADKRKQRDDVAAFESASGRRSVFRVEVGRRNRVTPSALVGAL
VNEGGLASRNIGNIDIRAEHTLVELPADMPEDLLRKLRKTQVAGRGLRITQSDGEVSRGG
GRGSRGPKRDGGRSFRNKGARPVAGQRRRD
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgttccacgaactcgcgctcgacgaccgtgtcctgagctccatcaccgagatc
ggctacgaaacgccctcgcccatccaggagcagacgatcccgccgttgatggagggccgg
gacgtcatggggctcgcgcagacgggcaccggcaagactgccgcgttcgccttgccgatc
ctgtcccacctcgacatgtcggcgaagaagccgcaggctctggtgctggccccgacccgt
gaactggcgatccaggtcgccgaggcgttccagaagtacgccgcgcacctgccgggtttc
cacgtgctgccgatctacggcggccagagctacgggccgcagttggccggtctcaaacgc
ggtgtgcaggtcgtcgtcggcacccccggccggctcatcgaccacctggataaggggtcg
ctggacctgtccgaactgcggatgctggtgctcgacgaagccgacgagatgctgcggatg
gggttcatcgacgacgtcgagcgcatcctgcagtccgttcccgaccagcggcaggtcgcg
ctgttctcggccaccatgccgccggcgatccgcaagatcagccagtcctacctgcgggaa
ccggtggagatctcggtcaagacgaagaccagcaccgccaccaacatcaaccagcgccac
atccctgtccgcggaccgaacaagctggacgcgatcacccgcatcctcgaggtcgaaccg
ttcgacgcgatgatcgtgttcgtgcggaccaagcaggccaccgaggagatcgccgagaag
ctccaggcccgcgggttcagtgccgccgccatcaacggcgacatcgcgcaggcacagcgg
gagcggacgatcgggcacctgcgtgaaggaaggctcgacatcctcgtcgcgaccgacgtg
gcggcgcgggggctcgacgtggaacgcatctcgcacgtgctcaactacgacatcccgcac
gacagcgagtcctacgtgcaccgcatcggccgcaccggccgcgcgggacgcagtggtgag
gcgatcctgttcgtctcgccgcgtgagcggcacatgctgcgctccatcgagaaggccacc
cgtcagtccatcgcacagatggagttgccgacgatcgaggcggtcaacgaccagcggctg
cagaagttcgcgcagacgatcaccgagacgctgagcgcgggtggcctcgagaccttccag
gacctggtccgcgactacgagcagtcccacgacgtgcccgcactggagatcgcagccgcg
ctggcccggatggctcagggagaccggccgctgctgctggagccggagccggccgccgac
aagcgcaagcagcgtgacgacgtcgcggccttcgagtccgccagcggccgccgtagcgtg
ttccgcgtcgaggtcggccgccggaatcgggtgacccccagcgcgctggtcggcgcactc
gtcaacgaaggcgggctggccagtcgcaacatcggcaacatcgacatccgggccgagcac
acgctcgtcgagttgcccgcggacatgcccgaggacctgctgcgcaagttgcgcaagacg
caggtggccggtcgcgggttgcggatcacccagtccgacggcgaggtcagccgtggtggc
gggcgcggctcgcgtggtcccaagcgcgacgggggccgttcgttccgcaacaagggtgct
cgcccggtcgccgggcaacgccgccgcgactga
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