Allosaccharopolyspora coralli: GIY23_17830
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Entry
GIY23_17830 CDS
T06288
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sace
Allosaccharopolyspora coralli
Brite
KEGG Orthology (KO) [BR:
sace00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sace03019
]
GIY23_17830 (hrpA)
Enzymes [BR:
sace01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GIY23_17830 (hrpA)
Messenger RNA biogenesis [BR:
sace03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GIY23_17830 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
HA2_N
AAA_25
T2SSE
AAA_16
NACHT
SIS
AAA_23
PhoH
ResIII
RsgA_GTPase
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
QGK71131
UniProt:
A0A5Q3Q8Y1
LinkDB
All DBs
Position
complement(3828481..3832446)
Genome browser
AA seq
1321 aa
AA seq
DB search
MGPTPDSTALADLRERLPSLMHHEQVRLRRRLDGVRKIRDPQAVEAVTSEIAADVDAAET
RVQNRRAQVPSIGYPDALPVSHKRDDLLEVIRDNQVVIVAGETGSGKTTQIPKMCLELGR
GVQGLIGHTQPRRLAARTVAERVAEELDTELGATVGYQVRFTDRSGDDTLVKLMTDGILL
AEIQRDRLLRRYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSR
HFGDAPVVEVSGRTYPVEVRYRPLLDDDGEADSRDERDQTQGIIDAVHELAAAGPGDVLV
FLSGEREIRDTADALNQVELRNTEVLPLYARLSSAEQHRVFQRHTGRRIVLATNVAETSL
TVPGIKYVIDPGTARISRYSARTKVQRLPIEAVSQASANQRKGRCGRTSDGICIRLYSED
DFLARPEFTDPEILRTNLASVILQMTSLGLGDIASFPFVEPPDKRQITDGVNLLHELGAI
EQDTKSAKSGNGAQRRLTGVGRKLSQLPIDPRLARMVLEAERNGCVREAMVITAALSIQD
PRERPADKQQAADEKHRRFADKESDFLAYLNLWNYAREQQRELSSNQFRKLCRAEFLNYL
RVREWQDLYSQLRQMVKQLGLSINDEPADSPRIHQSLLSGLLSHIGLKDEERKPRSQQRP
QRKPMTEFVGARGTKFAVFPGSALFKKPPRWVMAAELVETSRLWGRVVARIEPEWVEKLA
QHLVKRNYGEPHWEKDRAAVVAFEKVTLYGVPLVADRKVQYGRIDPELSRELFIRHALVE
GDWDTRHQFFHDNRALLAEVDELEQRVRRRDILVDDETLFEFYDRRVGSDVVSGKHFDSW
WKKKRREDPHLLDFEKSMLINTSKGAVSDADYPDSWRQNAHELPLTYQFEPGADADGVTV
HIPVPVLNQIDPVEFEWQIPGLREELVTALIKSLPKPLRRNFVPAPDYAKAVLQRVRPCS
EPLLDTLERELRALTGITVARQEWDFAALPGHLRITFRVVEDSTTVAEGRDLQALKQQLR
PNMSAALSAAADGVERSGVTEWDFGDLPRTFEQRADEQDVKAFPALVDEGESVGVRMFGT
EAEQRAAGWAGTRRMLLMAVPSPVKSQVKGLSTRARLVFSRSPHGDVAALVEDCVGCAVD
KIVAENGGPVWEETAFGTLKEKVRVGIGPYTAHLVSTVEKVLTAAQQVDTLLAERGGQLP
AEAREDITTQLSNLIHPGFVTATGWDRLPDLTRYLRGIEHRLDKLPQNPRRDRDLMDEVH
QVEDRYQGLLDGVPQERPVSDELRRIGWMIEDLRVSFFAQSLGTPQPVSVKRLHKAMDTL
L
NT seq
3966 nt
NT seq
+upstream
nt +downstream
nt
atgggacccactccggacagcacggcactcgccgacctgcgcgaacgcctgccctcgctg
atgcaccacgagcaggtgcggctgcgtcgccgtctcgacggcgtgcgcaagatccgcgat
ccgcaggctgtggaggccgtcaccagcgagatcgccgccgacgtcgacgccgccgagacg
cgcgtgcagaaccggcgcgcacaggtcccgagtatcggctacccggacgcgttgccggtc
agccacaagagggacgacctgctcgaggtgatccgcgacaaccaggtcgtgatcgtcgcg
ggtgagacggggtcggggaagacgacgcagatcccgaagatgtgtctggagctcggccgc
ggcgtgcaggggctcatcggccacacccagcccaggcggttggccgcgcgcaccgtcgcc
gagcgggtcgccgaggagctcgacaccgagctcggcgcgacggtcggctaccaggtgcgt
ttcaccgaccggtccggcgacgacacgctcgtcaagctgatgaccgacggcatcctgctc
gcggagatccaacgcgaccggctgttgcgccgctacgacacgatcatcatcgacgaggcg
cacgagcgcagcctcaacatcgacttcctgctcggctacctcaaggagctcctgccgcgc
cgccccgacctcaaggtgatcatcacgtcggccacgatcgacccggagcgcttctcccgg
cacttcggcgacgcaccggtggtcgaggtctccggacgcacctatcccgtggaggtgcgc
taccgcccgctgctcgacgacgacggcgaggccgacagccgtgacgagcgggaccagacg
cagggcatcatcgacgccgtccacgagctcgccgccgcaggacccggcgacgtactcgtg
ttcctcagtggcgagcgcgagatccgggacaccgccgacgcgctgaaccaggtcgagctg
cgcaacaccgaagtgttgccgttgtacgcgaggttgtcgtcggccgagcagcaccgggtt
tttcagcggcacacgggcaggcggatcgtgctcgcgaccaacgtcgccgaaacgtcgttg
acggtgccgggcatcaaatacgtgatcgacccgggcaccgccagaatctcccgctacagc
gcgcggacgaaggtgcagcgactgccgatcgaggccgtctcgcaggcgtcggcgaaccag
cggaaaggccgctgcgggcgaacctccgacggcatctgcatccgtctgtactccgaggac
gacttcctggcgcggcccgagttcaccgacccggagattctgcgcacgaacctggcgtcg
gtgatcctgcagatgacctccctcgggttgggcgacatcgcgtccttcccgttcgtggaa
ccgccggacaagcggcagatcacggacggagtgaacctgctgcacgagctgggcgcgatc
gagcaggacacgaaatccgcgaaatccgggaacggcgcccagcggcgcctgaccggtgtc
gggcgcaagctctcccagctgccgatcgacccgcggctcgcacggatggtgctggaggcc
gaacgcaacggctgtgtgcgggaggcgatggtcatcaccgccgccctgtccattcaggat
cctcgtgaacgtccggcggacaagcagcaggcggccgacgagaagcaccgccgcttcgcc
gacaaggaatccgacttcctcgcctatctgaacctgtggaactacgcgcgggagcaacag
cgcgagctctcgtcgaaccagttccgcaagctgtgccgggccgagttcctcaactatctg
cgggtgcgcgagtggcaggacctgtattcgcagctgcgtcagatggtcaaacaactcgga
ctctcgatcaacgacgagccggccgactcgccccggatccaccagtccttgctgtccggg
ctgctctcgcacatcgggctcaaggacgaggagcgcaaacctcgatcgcagcaacgtccg
caacggaaaccgatgaccgagttcgtcggcgcacgcgggacgaagttcgcggtgttcccc
gggtcggcgttgttcaagaaaccgccgcgctgggtgatggccgccgaactcgtcgagaca
tcccggctgtgggggcgggtcgtggcccgcatcgagcccgagtgggtcgagaaactcgcc
cagcacctggtgaaacgcaactacggcgaaccgcactgggagaaggaccgggccgcggtc
gtcgccttcgagaaggtcacgctctacggggttccgttggtcgcggaccgcaaggtccag
tacgggcgcatcgaccccgagttgtcccgcgagctgttcatccggcacgcgctcgtggag
ggtgactgggacacgcggcaccagttcttccacgacaacagggcactgctcgccgaggtc
gacgaactggagcagcgggtgcggcgccgcgacatcctcgtcgacgacgaaacgctcttc
gagttctacgaccggcgcgtcgggtccgacgttgtctcgggcaagcacttcgactcgtgg
tggaagaagaagcggcgcgaggatccgcacctgctcgacttcgagaagtcgatgctgatc
aacaccagcaagggcgcggtcagcgacgccgactacccggacagctggcgacagaacgcg
cacgaactgccgttgacctaccagttcgaacccggtgccgacgccgacggtgtcaccgtg
cacatcccggtgccggtactcaatcagatcgatccggtcgagttcgaatggcagatcccc
ggcctgcgcgaagaactggtcaccgcactgatcaagtccctgccgaaacccttgcggcgc
aacttcgttcccgcacccgactacgcgaaggccgtgctgcagcgggtgcggccgtgttcg
gagccgctgctggacacattggagcgggaactgcgggcgctgaccggaatcacggtggcg
cgtcaggaatgggacttcgcggcacttcccggtcacctcaggatcaccttcagggtggtc
gaggattccacgacggtcgccgagggccgtgatctgcaggcgttgaaacaacaactccgg
ccgaacatgagcgccgccttgtccgcggccgctgacggagtcgaacgcagcggggtgacc
gaatgggatttcggggacctgccgcgcacgttcgagcagcgggccgacgagcaggacgtc
aaagcgttcccggcgttggtcgacgagggcgagagcgtcggcgtgcgcatgttcggcacg
gaggccgagcagcgcgccgccggctgggccgggactcgacggatgctgctcatggccgtg
ccgtcgccggtgaagtcacaggtcaaggggctgtcgacgcgggcccgcctggtgttctcc
cgcagcccgcacggtgacgtcgccgcgctcgtcgaggactgcgtgggatgtgccgtcgac
aagatcgtcgccgagaacggtggtccggtgtgggaggaaacggccttcggcacgctcaag
gagaaggtgcgggtcggcatcgggccgtacacggcacatctggtgtccacagtggagaag
gtgctgaccgcggcacaacaggtcgacacgctgctcgcggaacggggcggacagctcccg
gccgaggcccgcgaggacatcacgacccagctgtcgaacctgattcatcccggcttcgtc
accgccaccggatgggatcgactgccggacctcactcggtacctgcgggggatcgagcac
cggctcgacaagctgccgcagaacccgcgacgcgaccgtgacttgatggacgaggtccat
caagtcgaggaccgctaccaggggctgctcgacggcgttccgcaggaacgcccggtcagc
gacgaactgcgtcgcatcgggtggatgatcgaggacctgcgggtgagcttcttcgcgcag
tccctgggcacaccacagccggtgtcggtgaagcggttgcacaaggcgatggacacactg
ctctga
DBGET
integrated database retrieval system
