Allosaccharopolyspora coralli: GIY23_20290
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Entry
GIY23_20290 CDS
T06288
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sace
Allosaccharopolyspora coralli
Pathway
sace03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sace00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GIY23_20290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sace03021
]
GIY23_20290
03400 DNA repair and recombination proteins [BR:
sace03400
]
GIY23_20290
Enzymes [BR:
sace01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GIY23_20290
Transcription machinery [BR:
sace03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GIY23_20290
DNA repair and recombination proteins [BR:
sace03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GIY23_20290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QGK71542
UniProt:
A0A5Q3QAN6
LinkDB
All DBs
Position
complement(4351146..4355057)
Genome browser
AA seq
1303 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAASVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVNTEMRHNDLSTLENEMNVERKRVSDERDSDLEARAQKLEAD
LAELENEGAKSDVRRKVKEGGEREMRQLRDRAQRELDKLDEIWSTFTKLEPRQLIPDELL
YRELYDRYGEYFTGGMGAEAIESLLQGFDIDAEAESLREVIRSGKGQKKLRALKRLKVVA
AFQSTGNDPSGMVLGAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVSGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLQLHQCGLPKEMAVELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
AQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLSSNNILSPASGRPLAMPRLDMVTGLYHLTKQVDGADGEGQ
AFSSVGEAIMAYDRGGLDLQAKVKIRLKDAAPNKDMAPEGWEPGDTWLAETTLGRVYFNE
NLPADYPFVNELLPKKKQAAIVNDLAERYPMVAVAKTLDKLKDAGFYWATRSGVTVSISD
VVVPPNKTEILDGYEQRADQVEKRYRRGALSHQERNAELVKVWTAAKEEVAEEMENNFPE
DNSIATIVKSGAAGNMTQVVQLAGMRGLVSNPKGEYIPRPIKANFREGLSVLEYFISNHG
ARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCKTERGITMPIAEVLPDGTVMRDAH
VETSVYARTTADDVTDADGNVVLARGADLGDPAIEKLVGAKIAKVKVRSVLTCESGVGVC
AVCYGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFQQGGVTADDITTGLPRVQEL
FEARIPKGKAPIADAPGRIRLEDNDRYWKITIIPDDGSDEIVYDKLSKRQRLAVIAVDGT
ERQVADGDHIDVGQQLMEGAVDPHEVLRVMGPREAQLHLVREVQEVYRSQGVGIHDKHVE
VIVRQMLRRVIIIDSGATEFLPGAPVERSTFESENRRVVSEGGDPASGRPVLMGITKASL
ATDSWLSAASFQETTRILTNAAIEGASDKLVGLKENVIIGKLIPAGTGINRYRNIQVQPT
EEARAAAYAIPSYDDGYYTPDVFGAGTGAAVPLDDYDFGRDYR
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
gtgcttgacgtcaacttcttcgacgaactccgcatcggcctcgccacggccgacgacatc
cgccagtggtcgttcggcgaggtcaagaagcccgagaccatcaactaccgcaccctgaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgggtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgcgaaggtccgccgtgagcggatgggccacatcgaactcgccgcctcg
gtgacgcacatctggtacttcaagggtgtgccgagccggttgggctacctgctcgacctg
gcccccaaggacctcgagaagatcatctacttcgccgcgtacgtgatcacatcggtgaac
accgagatgcggcacaacgatctctcgacgctcgagaacgagatgaacgtcgagcgcaag
cgggtctccgacgaacgtgactccgacctggaggcgcgcgcccagaagctcgaggccgac
ctggccgaactcgagaacgagggtgccaagagcgacgtgcgccgcaaggtcaaggagggc
ggcgagcgtgagatgcgccagctccgcgaccgcgcgcagcgggagctcgacaagctcgac
gagatctggtcgacgttcaccaagctcgagccgcgccagctcatcccggacgagctgctc
taccgcgagctctacgatcgctacggcgagtacttcaccggcggcatgggcgccgaggcg
atcgagtcgttgcttcagggcttcgacatcgacgccgaggccgagtcgctgcgcgaggtc
atccgctcgggcaaggggcagaagaagctgcgcgcgctcaagcggctgaaggtcgtcgcg
gcgttccagtcgaccggcaacgacccgagcggcatggtgctgggcgccgtcccggtcatc
ccgccggacctgcgtccgatggtgcagctcgacggtggccggttcgcgacctccgacctc
aacgacctgtaccgccgggtcatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggtgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtggacgcg
ctgttcgacaacggccgtcgtggccgccccgtcagcggtcccggcaaccgtccgttgaag
tcgctgtccgacctgttgaaggggaagcagggccggttccggcagaacctgctcggtaag
cgtgtcgactactccggtcgttcggtcatcgtcgtcggtccccagctgcagctgcaccag
tgcggtctgccgaaggagatggcggtcgagctgttcaagccgttcgtgatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagtccgcgaagcggatggtggagcggcagcgt
gcgcaggtctgggacgtcctcgaagaggtcatcgccgagcacccggtgctgctcaaccgt
gcccccacgctgcaccgcctcggtattcaggcgttcgagccgcagctggtcgagggcaag
gcgatccagctgcacccgctggtgtgcgaggcgttcaacgccgacttcgacggtgaccag
atggccgttcacctgccgctgtcggcggaggctcaggccgaggcgcgcgtgctgatgttg
tcgagcaacaacatcctctcgcctgcgtcgggccgtccgctggcgatgccgcggctggac
atggtcaccggcctgtaccacctcaccaagcaggtggacggcgccgacggtgagggtcag
gcgttctcgtcggtcggcgaggcgatcatggcttacgaccgcggtggcctcgacctgcag
gcgaaggtgaagatccggctcaaggacgccgcgcccaacaaggacatggcgccggagggc
tgggagcccggggacacgtggctcgccgagaccacgttgggccgggtgtacttcaacgag
aacctgcccgctgactacccgttcgtgaacgagctgctgccgaagaagaagcaggcggcg
atcgtcaacgatctcgccgagcggtacccgatggtcgccgtggcgaagacgctggacaag
ctcaaggacgccggcttctactgggcgacccgctcgggcgtgaccgtgtccatctcggac
gtggtcgtgccgccgaacaagacggagatcctggacggctacgagcagcgggcggaccag
gtcgagaagcggtaccgccgcggtgctctctcgcaccaggagcgcaacgccgaactcgtc
aaggtgtggacggcggccaaggaggaggtcgccgaggagatggagaacaacttcccggag
gacaactccatcgccacgatcgtcaagtccggtgccgccggtaacatgacgcaggtcgtg
cagctggccgggatgcgtggactggtgtcgaacccgaagggtgagtacatcccgcgtccg
atcaaggccaatttccgcgagggtctgtcggtgctggagtacttcatctccaaccacggt
gcccggaagggtctggcggacaccgcgctgcggaccgccgactcggggtacctgacccgc
cgtctggtcgacgtctcgcaggacgtgatcgtgcgcgagacggactgcaagaccgagcgc
ggcatcacgatgccgatcgcggaggtcctgcccgacggcacggtgatgcgcgacgcccac
gtcgagaccagcgtctacgcccggaccaccgccgacgacgtcaccgacgccgacggcaac
gtggtgctcgctcggggtgcggacctgggtgacccggcgatcgagaagctcgtcggggcg
aagatcgcgaaggtcaaggttcgcagcgtcctgacctgtgagtcgggcgtcggggtctgc
gcggtctgctacggccgttcgatggcgaccggcaagctggtcgacgtcggtgaggccgtc
ggtatcgtcgccgcgcagtcgatcggtgagcccggcacgcagctgacgatgcgcaccttc
cagcagggtggtgtgaccgcggacgacatcacgaccggtctgccgcgtgtgcaggagctg
ttcgaggcacggatcccgaagggcaaggcgccgatcgccgacgcgcccggccggatccgg
ctggaggacaacgaccggtactggaagatcacgatcattccggacgacggcagcgacgag
atcgtctacgacaagctctcgaagcgtcagcgtctcgcggtgatcgcggtggacggcacc
gagcgccaggtcgccgacggcgaccacatcgacgtcggccagcagctcatggaaggtgcg
gtcgacccgcacgaggtgctgcgtgtgatgggcccgcgggaggcgcagctgcacctggtc
cgggaggtccaggaggtgtaccgctcgcagggcgtgggcatccacgacaagcacgtcgag
gtgatcgtccgccagatgctgcggcgggtcatcatcatcgactcgggtgccaccgagttc
ctgccgggtgccccggttgagcgctcgacgttcgagtcggagaaccggcgcgtggtctcc
gagggcggtgacccggcttcgggtcgtccggtgctcatgggcatcacgaaggcctcgctg
gcgacggactcgtggctgtcggcggcgtccttccaggagacgacccgcattctcacgaac
gccgcgatcgagggcgcgagtgacaagctggtcggcctcaaggagaacgtcatcatcggt
aagttgatcccggccggtacgggcatcaaccggtaccgcaacatccaggtgcagccgacg
gaggaggctcgggccgcggcctacgcgatcccgtcctacgacgacggctactacaccccg
gacgtcttcggcgccgggacgggtgcggcggttccgctcgacgactacgacttcggtcgc
gactaccgctga
DBGET
integrated database retrieval system
