Saccharopolyspora sp. ASAGF58: FDZ84_09070
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Entry
FDZ84_09070 CDS
T06538
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sacg
Saccharopolyspora sp. ASAGF58
Pathway
sacg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sacg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FDZ84_09070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sacg03021
]
FDZ84_09070
03400 DNA repair and recombination proteins [BR:
sacg03400
]
FDZ84_09070
Enzymes [BR:
sacg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FDZ84_09070
Transcription machinery [BR:
sacg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FDZ84_09070
DNA repair and recombination proteins [BR:
sacg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FDZ84_09070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QIZ34848
LinkDB
All DBs
Position
complement(1962925..1966836)
Genome browser
AA seq
1303 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAAVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVNTEMRHNDLSTLESEISVERKRVADQRDADLEARAQKLEAD
LAALEAEGAKSDQRRKVKEGAEREMKQLRDRAQRELDKLDEIWETFTKLEPRQLIPDEML
YRELYDRYGEYFTGGMGAEAIQLLLSTFDIGAEAELLRETIRSGKGQKKLRALKRLKVVA
AFQATGNDPSGMVLNCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKEMAVELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYHLTRQVDGAKGEGL
AFSSVGEAIMAFDRGVLDLQATIKIRLRDVVPNKAQLPEGWEPGQPWLAETTLGRVWFNE
LLPEDYPFVDDLLPKKRQAAIVNDLAERYPMVTVAQTLDKLKDAGFHWATRSGVTVSITD
VVVPPAKTEILDNYEAKADQVEKRYRRGALSYQERNAELVKVWTAAKDEVAEAMEANFPE
DNSISMIVKSGAAGNMTQVVQLAGMRGLVSNPKGEYIPRPIKANFREGLSVLEYFISNHG
ARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGIRMPIAELLDDGKLLRDAH
VETSVYARTTADDVTDSDGNIVLARGSDLGDPAIEKLLAANITKVKVRSVLTCESGVGVC
AVCYGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPRVQEL
FEARVPKGKAPIADTSGRIRLEDNDRYWKITIIPDDGGEEIVYDKLSKRQRLAAISVDGT
ERQVADGDHIEVGQQLLEGAVDPHEVLRVMGPREAQLHLVREVQEVYRSQGVGIHDKHVE
VIVRQMLRRVIIIDSGATEFLPGSPVERSQFEAENRRVVAEGSDPASGRPVLMGITKASL
ATDSWLSAASFQETTRILTNAAIEGASDKLVGLKENVIIGKLIPAGTGINRYRNIQVQPT
EEARAAAYAIPSYDDSYYTPDVFGTGTGAAVPLDDYDFGRDYR
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
gtgcttgacgtcaacttcttcgatgaactccgcatcggcctcgctacggccgacgacatc
cgccagtggtcgtacggcgaggtaaagaagcccgagaccatcaactaccgcaccctgaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgggtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtcacccgcgccaaggtgcgtcgtgagcggatgggccacatcgagctcgccgccgcc
gtgacccacatctggtacttcaagggcgtcccgtcccggctgggctacctgctcgacctg
gcccccaaggacctcgagaagatcatctacttcgccgcctacgtgatcacctcggtgaac
accgagatgcggcacaacgacctgtcgacgctggagagcgagatcagcgtcgagcgcaag
cgcgtcgccgaccagcgcgacgccgacctggaggcccgggcccagaagctcgaggccgac
ttggccgcgctcgaagccgaaggcgccaagagtgaccagcgccgcaaggtcaaggaaggc
gccgagcgcgagatgaagcagctgcgcgaccgcgcgcagcgcgagctcgacaagctcgac
gagatctgggagaccttcaccaagctggagccccgccagctcatccccgacgagatgctg
taccgcgagctctacgaccggtacggcgagtacttcaccggcggcatgggtgccgaggcc
atccagctgctgctgtcgaccttcgacatcggcgccgaggccgagctgctgcgcgagacc
atccgcagcggcaagggccagaagaagctgcgcgccctcaagcggctcaaggtcgtggcg
gccttccaggccaccggcaacgacccgagcggcatggtgctcaactgcgtgccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgccacctccgacctc
aacgacctgtaccgccgggtgatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggggctcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtggacgcg
ctgttcgacaacggccgtcgcgggcgtccggtcaccggcccgggcaaccggccgctgaag
tcgctgtccgacctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactccggccgttcggtcatcgtggtcggcccgcagctgaagctgcaccag
tgcggtctgccaaaggaaatggcggtcgagctgttcaagccgttcgtcatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagtccgcgaagcggatggtggagcgccagcgc
ccgcaggtgtgggacgtgctggaagaggtcatcgccgagcacccggtgctgctcaaccgt
gctcccacgctgcaccgcctcggcatccaggccttcgagccgcagctggtggaaggcaag
gccatccagctgcacccgctggtctgcgaggcgttcaacgcggacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcccaggccgaggcccggatcctgatgctg
tccagcaacaacatcctgtcgccggcctccggtcggccgctggccatgccgcgtctggac
atggtcaccggcctctaccacctgacccgtcaggtggacggcgccaagggcgagggcctg
gcgttctcctcggtcggcgaggccatcatggccttcgaccgcggggtgctcgacctgcag
gccacgatcaagatccggctgcgcgacgtggtgccgaacaaggcccagctgccggagggc
tgggagcccggtcagccgtggctggccgagaccaccctcggccgggtctggttcaacgag
ctgctgcccgaggactacccgttcgtcgatgacctgctgccgaagaagcggcaggccgcg
atcgtcaacgacctggccgagcggtacccgatggtcaccgtggcgcagaccctggacaag
ctcaaggacgccggtttccactgggcgacccgttccggggtgacggtgtcgatcaccgac
gtggtggtgccaccggccaagaccgagatcctggacaactacgaggccaaggccgaccag
gtcgagaagcggtaccgccgcggtgcgctgtcctaccaggagcgcaacgcggagctggtc
aaggtctggacggccgccaaggacgaggtcgccgaggccatggaggcgaacttcccggag
gacaactcgatcagcatgatcgtgaagtctggggccgccggtaacatgacccaggtcgtc
cagctggccggtatgcgtggtctggtgtcgaacccgaagggtgagtacatcccgcgcccg
atcaaggcgaacttccgcgagggcctgtccgtgctggagtacttcatctccaaccacggt
gcccgcaagggtctcgccgacaccgcgctgcggaccgccgactcgggttacctgacccgt
cgtctggtggacgtctcgcaggacgtcatcgtccgcgagaccgactgcggcaccgagcgc
ggcatccggatgccgatcgcggagctgctggacgatggcaagctcctgcgcgacgcgcac
gtggagaccagcgtctacgcccgcaccacggccgacgacgtcaccgactccgacggcaac
atcgtgctcgcccgcggttcggacctgggtgacccggcgatcgagaagctgctcgccgcc
aacatcaccaaggtcaaggtccgcagcgtcctgacctgcgagtccggcgtcggcgtctgc
gcggtctgctacggccgttcgatggccaccggcaagctggtggacgtcggcgaggccgtc
ggcatcgtcgccgcccagtcgatcggtgaacccggtacgcagctgacgatgcgtacgttc
caccagggcggtgtcgccggtgacgacatcaccaccggtctgccgcgtgtccaggagctg
ttcgaggcccgggtcccgaagggcaaggcgccgatcgccgacacctcgggccggatccgg
ctggaggacaacgaccgctactggaagatcacgatcattccggacgacggcggcgaggag
atcgtctacgacaagctgtccaagcggcagcggctcgcggcgatctcggtcgacggcacc
gagcggcaggtcgccgacggcgatcacatcgaggtcggccagcagctgctggaaggtgcg
gtcgacccgcacgaggtgctgcgcgtgatgggcccgcgcgaggcccagctgcacctcgtt
cgcgaggtgcaggaggtgtaccggtcgcagggtgtgggcatccacgacaagcacgtcgag
gtcatcgtccgccagatgctgcgccgggtcatcatcatcgactcgggtgccaccgagttc
ctgcccggttcgccggtcgagcgctcgcagttcgaggcggagaaccgccgcgtcgtcgcc
gagggcagcgacccggcttccggccgcccggtcctgatgggcatcaccaaggcgtcgctg
gccaccgattcgtggctgtcggcggcctctttccaggagacgacccgcatcctcacgaac
gccgcgatcgagggcgcgagtgacaagctggtcggcctgaaggagaacgtgatcatcggt
aagttgattccggctggtacgggcatcaaccggtaccgcaacatccaggtgcagccgacg
gaggaggcgcgggccgcggcgtacgcgatcccgtcctacgacgacagctactacacccca
gatgtgttcggcaccggcaccggtgcggcggttccgctggacgactacgacttcggccgc
gactaccgctga
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integrated database retrieval system
