Saccharopolyspora sp. ASAGF58: FDZ84_18900
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Entry
FDZ84_18900 CDS
T06538
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sacg
Saccharopolyspora sp. ASAGF58
Pathway
sacg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sacg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FDZ84_18900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sacg03019
]
FDZ84_18900
03400 DNA repair and recombination proteins [BR:
sacg03400
]
FDZ84_18900
Enzymes [BR:
sacg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FDZ84_18900
Messenger RNA biogenesis [BR:
sacg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FDZ84_18900
DNA repair and recombination proteins [BR:
sacg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FDZ84_18900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
AAA_22
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
QIZ36365
UniProt:
A0A6H1R7T0
LinkDB
All DBs
Position
complement(3962450..3964570)
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AA seq
706 aa
AA seq
DB search
MDENALRELADDRLRALAGPDAALREDQWSAIRALVLERRRALVVQRTGWGKSAVYFIAT
ALLRELGEGPTVIVSPLLALMRNQVDAAAAAGVRAATINSANPDEWADIEEEVAAGEVDV
LLVSPERLNNPDFRDTILPELTQAAGLLVVDEAHCISDWGHDFRPDYRRLRTLLTELPEG
VPVLATTATANDRVVQDVADQLGVGGEFTDPQETLVLRGSLDRESLRLGVVRLPTAQARL
GWLASHLKELPGSGIIYTLTVAATDEIAAYLREQGYEVASYSGRTDPAERQQAEADLLAN
RVKSLVATSALGMGFDKPDLGFVVHLGAPSSPIAYYQQIGRAGRGVQRAEVLLLPGPEDR
DIWSYFASLAFPPEPTVRAVLDALAHQERMSTAALEPYVELGRTRLEMVLKVLDVDGAVR
RVKGGWEATGAPWHYDAKRYERIAAERRSEQQAMLDYLGTSSCRMEFLRRQLDDPAAEPC
GRCDNCTGSGYSSDVDDQAVQQAEERLRRPGVEVSPRKMWPSGMDALSIPVSGKLPAGQQ
ATTGRAIGRLTDIGWGNRLRELLATGAPDQELPDDLFQAGIKVLAAWDWARRPVGVVALG
SRTRPRLVRSLAERIATIGRLPLLGEVLTNPNTTPRRATNSAQRVASLWQQFKVPEDLAA
KLSTLDGPVLLMDDYADTGWTITVASRLLRQAGAPAVLPFTLATTS
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
gtggacgaaaacgcgctgcgcgaactcgccgacgaccgactccgtgcgctggccggcccc
gacgccgcgctgcgcgaggaccagtggagcgcgatccgcgcactggtgctggagcgtcgt
cgagcgctcgtggtgcagcgcaccggctggggcaagtccgccgtctacttcatcgccacc
gcgctgctgcgcgaactcggcgaaggcccgaccgtgatcgtttcgccgctgctcgcgctg
atgcgcaaccaggtcgatgcggccgcggcggccggcgtgcgcgccgcgacgatcaactcc
gcgaacccagacgagtgggccgacatcgaggaggaggtcgccgccggcgaggtcgacgtg
ctgctggtcagcccggaacggctgaacaaccccgacttccgggacacgatcctgccggag
ctcacccaagccgcgggcctgctcgtggtcgatgaggcgcactgcatctccgactggggc
cacgacttccgcccggactaccggcggctgcggacgctgctcaccgagctgcccgagggc
gtcccggtgctcgcgaccacggccaccgcgaacgaccgcgtcgtgcaggacgtcgccgac
cagctcggggtgggcggcgagttcaccgatccgcaggaaacgctggtcctgcgcggcagc
ctggaccgggagagcctgcgactgggcgtggtccggttgcccacggcgcaggcccggctg
ggctggctggcgagccacctgaaggaactgcccggctcggggatcatctacacgctcacg
gtggcggcgaccgacgagatcgcggcctacctgcgcgagcagggctacgaggtggcgtcc
tattcgggccgcaccgatcccgccgagcggcagcaggccgaggccgacctgctggcgaac
cgggtcaagtcgctggtggcgacctccgcgctgggcatgggttttgacaagcccgacctc
ggattcgtcgttcacctcggcgcgccgtcctcgccgatcgcctactaccagcagatcggc
cgcgccgggcgtggtgtgcagcgggccgaggtgctgctgctacccggcccggaggaccgc
gacatctggagctacttcgcgtcgctggccttcccgccggaaccgacggtgcgcgcggtt
ctcgatgcgttggcgcaccaggaacgcatgtcgacggccgcgctcgaaccgtatgtcgag
ctcgggcgcacccggttggagatggtgctgaaggtgctggacgtcgacggggccgtccgc
cgggtgaagggcggctgggaggccaccggcgcgccgtggcactacgacgccaagcgctac
gagcgcatcgccgcggagcggaggtccgagcagcaggcgatgctcgactacctcgggacg
tcgtcttgccgcatggaattcctgcggcggcaactcgacgatccggcggccgagccctgc
ggacgctgcgacaactgcaccggctccggctattccagcgacgtcgacgaccaggccgtg
cagcaggcggaggagcgactgcggcgacccggcgtggaggtttcgccccgcaagatgtgg
ccgagtggcatggatgcgctcagcatcccggtctccggcaagctgcccgccggccagcag
gccaccacgggccgggcgatcgggcggctcaccgacatcggctggggcaaccggctgcgg
gaactgctcgccaccggcgcgcccgaccaggaactgccggacgacctgttccaggccgga
atcaaggtgctggccgcgtgggactgggcgcggcggccggtgggcgtggtcgcgctcggt
tcgcggacgcgtccgcggctggtgcgcagcctcgctgagcggatcgccacgatcggccgg
ttgccgctgctcggcgaggtgctgacgaacccgaacacgacgccccggcgcgccacgaac
agcgcccagcgggtggcgtcgctttggcagcagttcaaggtgcccgaggacctcgccgcc
aagctgtccacgctggacggaccggtgctgctgatggacgactacgccgacaccggctgg
accatcacggtcgccagccgcctgctccgccaagcgggcgccccggcagtcctgccgttc
accctcgccaccacttcgtga
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