Saccharopolyspora sp. ASAGF58: FDZ84_30650
Help
Entry
FDZ84_30650 CDS
T06538
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sacg
Saccharopolyspora sp. ASAGF58
Brite
KEGG Orthology (KO) [BR:
sacg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sacg03016
]
FDZ84_30650
Enzymes [BR:
sacg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FDZ84_30650
Transfer RNA biogenesis [BR:
sacg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FDZ84_30650
Prokaryotic type
tRNA splicing ligases
FDZ84_30650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QIZ38131
LinkDB
All DBs
Position
complement(6503631..6505043)
Genome browser
AA seq
470 aa
AA seq
DB search
MELVEETPYRFRIEQHGAMRVPGVVFASRRLLPSKGDGALDQVVNVAALPGIVGASYAMP
DMHWGYGFPIGGVAATDVRAGGVVSPGGVGFDISCGVRLLAAELDRPDFRRVAERIMDGL
SRATPRGAGRGAVWELPREGLDRLLEEGCHYAVARGRGTPRDLERCEDGGAVADAQPGRV
SARARDRGLGQVGSLGSGNHFLEVQAVAEIYDEGVAGAFGLRLDQLCVMIHCGSRGLGHQ
ICTDHVRSMDESMADYGLTVPDRQLACTPVDSPAGRAYLGAMAAAANYARANRQVLGVAA
GEVLRKVTGRGLDLVYDISHNLAKIETHEVEGQRRTLCVHRKGATRALPPGHPELPPSLR
EAGQPVLIPGSMGTASYVLTGVPTGDAFFSTCHGAGRTQSRHQAIRTTDPRRLRRDLEHD
GIVVRGSSARGLAEEAPTAYKDVDAVVAAAEGAGLCRRIARLVPLGVVKG
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
gtggagctcgtcgaggaaacgccgtaccggttccggatcgaacagcacggcgcgatgcgt
gtgccgggggtggtgttcgcgtcgcggcgactgctgccgtcaaagggcgacggcgcgctc
gaccaggtcgtcaacgtagccgccctgcccggcatcgtcggcgcgtcgtacgccatgccg
gacatgcactggggctacggattcccgatcggcggcgtcgcggcgaccgacgtccgcgcc
ggcggtgtcgtctcaccgggtggcgtcggtttcgacatctcctgcggggtgcggctgctg
gccgccgagctggaccggccggacttccgccgagtcgccgagcggatcatggacgggctc
agccgggccacgccgcgcggggcaggccggggcgcggtgtgggagttgccccgcgagggc
ctcgaccggttactggaagaggggtgccactacgccgtcgcgcgcgggcgcggcacgccg
cgcgacctggagcgctgcgaggacggcggcgcggtggccgacgcgcagccgggtcgggtc
agcgcccgcgcgcgggaccggggcctcgggcaggtcggcagcctcgggtccggcaaccac
ttcctggaggtccaggcggtcgccgagatctacgacgagggcgtcgccggggccttcggg
ctccgcctcgaccagctgtgcgtgatgatccactgcggttcccgcgggctcggccaccag
atctgcaccgaccacgtgcgcagcatggacgagagcatggccgattacggcctgaccgtc
ccggatcgccagttggcgtgcacgccggtcgattcgccggcgggtcgcgcttatctcggc
gcgatggccgcagcggcgaactacgcccgcgcgaaccgccaggtgctcggcgtcgccgcc
ggcgaggtgctgcggaaggtgaccggccgcgggctcgacctcgtctacgacatctcgcac
aatctcgccaagatcgagacgcacgaggtggagggccagcggcgaacgctgtgcgtgcac
cgcaagggagccacgcgcgcgctgccgcccgggcacccggaactgccgccgagcctgcgg
gaagccgggcagccggtcctgatccccggttcgatgggcacggcgtcctatgtgctcacc
ggcgtgccgaccggtgatgcgttcttctcgacgtgccacggcgccggacgcacgcagagc
cggcaccaggcgatccgcacgaccgatccccgccgcctgcgccgggacctggagcacgac
ggcatcgtcgtccgcggcagttccgctcgcgggctcgccgaggaggcgccgaccgcctac
aaggacgtcgacgccgtcgtcgccgccgccgaaggagccgggctgtgccgccgcatcgcc
aggctcgtgccgctgggcgtggtgaagggttga
DBGET
integrated database retrieval system
