Saccharopolyspora sp. ASAGF58: FDZ84_32760
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Entry
FDZ84_32760 CDS
T06538
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sacg
Saccharopolyspora sp. ASAGF58
Brite
KEGG Orthology (KO) [BR:
sacg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sacg03016
]
FDZ84_32760
Enzymes [BR:
sacg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FDZ84_32760
Transfer RNA biogenesis [BR:
sacg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FDZ84_32760
Prokaryotic type
tRNA splicing ligases
FDZ84_32760
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QIZ38433
LinkDB
All DBs
Position
6941572..6942762
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AA seq
396 aa
AA seq
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MYAAVEGARVPIRMWADPQSVEDAAMRQLHNVANLPWVHGLAVMPDVHYGKGATVGSVIA
MRNAVSPAAVGVDIGCGMSAVRTSLTAADLPDDLRVLRGRIESAVPVGFAMHRTPVNPSR
VPGLSGWQEFWSVFGELHPGVQNLQDRARAQIGSLGGGNHFIEVCLEQGGPDAGRVWLML
HSGSRGIGNELAKRHIDIARRLPHNADLPDPDLAVFVAGTSEMQAYRRDLFWAQDYAARN
RATMLALVQRALAETVPGTRFDTPISCHHNYVAEESYDGVEVLVTRKGAIRAGGGDLGII
PGSMGTGSYIVRGLGNERSFQSASHGAGRRMSRNKARKTFTAADLEAQTAGVECRKDAGV
VDEIPAAYKDIDSVIAAQTDLVEVVTHLKQVVCVKG
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtacgcggcagttgaaggtgcaagggtgccgatccggatgtgggctgacccgcagtcg
gtcgaagacgccgccatgcgccaattgcacaacgtcgccaacctgccatgggtgcacgga
ctcgccgtgatgccggacgtgcactacggcaagggcgccaccgtcggcagcgtgatcgcc
atgcgcaacgccgtgtccccggcggcggtcggcgtcgacatcgggtgcgggatgagcgcc
gtgcgaacgtccctgaccgctgccgatctgccggacgacctgcgtgtgctgcgcggccgg
atcgaatcggccgtgccggtcggcttcgccatgcaccgcaccccggtgaacccgtcgcgc
gtacccgggctgagcggctggcaggagttctggtccgtcttcggggaactgcacccgggc
gtgcagaacctccaggaccgggcgcgggcacagatcggcagcctcggcggcggcaaccac
ttcatcgaggtctgcctggagcagggcggcccggacgccggccgcgtgtggctgatgctg
cactcaggttcgcgcgggatcggcaacgagctggcgaagcggcacatcgacatcgcgcgg
cgcctcccgcacaacgcggacctgccggacccggacctcgcggtgttcgtcgcgggtacg
tcggagatgcaggcctaccgccgggacctgttctgggcgcaggactacgcggcgcgcaac
cgcgccacgatgctggccctggtgcagcgggcgctagccgaaacggtgccggggaccagg
ttcgacacgccgatctcgtgccaccacaactacgtggccgaggagagctacgacggcgtc
gaggtgctcgtcacccgcaagggcgcgatccgggcgggcgggggtgatctcggcatcatc
ccgggcagcatgggcaccgggtcgtacatcgtgcgcggcctcggcaacgagcggtcgttc
cagtccgcctcgcacggcgccggtcggcgaatgtcacggaacaaggcccgcaagaccttc
acggccgctgacctggaagcgcagacggccggcgtggagtgccgcaaggatgccggcgtg
gtcgacgagatcccggccgcttacaaggacatcgattcggtgatcgccgcgcaaaccgac
ctggtcgaggtggtgacgcacctgaagcaggtcgtctgcgtcaaggggtga
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