Shewanella acanthi: K0H61_02590
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Entry
K0H61_02590 CDS
T09152
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
sach
Shewanella acanthi
Pathway
sach02020
Two-component system
sach02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sach00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
K0H61_02590
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K0H61_02590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sach03021
]
K0H61_02590
Transcription machinery [BR:
sach03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K0H61_02590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
QYJ79355
LinkDB
All DBs
Position
complement(606050..607525)
Genome browser
AA seq
491 aa
AA seq
DB search
MKASLQLKLGQQLTMTPQLQQAIRLLQLSSLELQQEIQQALDSNPLLELEEEQFDASSDR
NQAIADTDFSEASALPPEQDNSAVDIAESLTKDSMPDELPIDTTWDEVYTASSNAGPGGS
REDDMPFQGETSEGLYEHLEWQKNLTPFSDTDMAIATAIIDAIDDQGYLTQSTEEILEAM
GNPDIELDEVEAVLKRIQHFDPLGVAARDLSECLLIQLSHFSPDTPQLDNARMLIKEHLD
LIAARDFRLLMRKTKLKEDDLRDSIALIQTLNPRPGLLITPIDEEYVVPDVSVSKKNGRW
VVELNPDCMPKINVNQQYAAMARSSKNQSDSQFIRGHLQEAKWFIKSLESRNDTLLKVAN
CIVQYQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPKGLFELKYFFSS
HVGTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGINVARRTIAKYREAM
LIPPSNQRKSL
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgtcactccagctcaaactgggtcaacagttaacaatgacgccacaactacaa
caggcaattcgcctgttacaattgtcgtcattggaattgcagcaagagatccagcaagcc
ttagactcaaatcctcttctcgagctggaagaggagcaatttgacgcatcgagtgaccgc
aatcaggccatcgccgatactgatttcagcgaagccagcgcccttccacccgagcaggat
aattctgccgtcgatatcgccgaatccttaactaaggattccatgcccgacgaacttccc
atagatacgacttgggatgaagtctacaccgcctcatccaatgccggccctggtggcagc
cgagaagacgatatgccctttcaaggcgaaaccagcgaagggctttacgaacacttagag
tggcaaaaaaatctcacccccttctccgacaccgatatggcaattgccaccgcaatcatc
gatgctatcgacgatcagggctatctgacccagagcaccgaagagattctcgaggccatg
ggtaatccggatatcgaactcgatgaagtcgaagcggtattgaagcgtatccaacatttc
gatcctctcggtgtcgcggcaagggatttaagcgagtgtctgctgatccaattatctcac
ttttcgcctgatacacctcaactagataacgctcgcatgctgatcaaggaacacttggat
ctgatcgctgcccgcgattttagattgttgatgcgaaagaccaagcttaaggaagatgat
ctgcgcgatagcattgcccttatccaaacccttaaccctcgtcctggtttattaatcacc
ccaatagatgaagaatacgttgtacccgatgtctcagtgtcgaagaaaaatggtcgttgg
gtcgtcgagctcaatccggattgcatgccaaaaatcaatgttaatcaacagtatgcagca
atggctcgcagcagtaaaaatcaatctgatagtcagtttatccgtggtcatctgcaggaa
gccaagtggtttattaagagtctagagagtcgtaacgacactcttcttaaggtggcaaat
tgcattgtgcagtatcagcaaggtttcttcgaatacggtgaagaagccatgaagcctatg
gttctgaacgatattgccgaagccgttgaaatgcacgagtcgaccatttcacgggtgact
acccaaaagtatatgcataccccaaagggactttttgaactaaaatatttcttctcaagc
cacgtcggcaccgacgatggcggtgagtgttcatccacagcaatcagagcttttattaag
aaactggttgcggcggaaaatcagaagaagcctctgagcgatagcaagatggcacaactt
ctggccgaacagggaattaacgtcgcccgaagaacgattgcgaagtatcgagaagcgatg
ctgatccccccatccaaccagcgtaaaagtttataa
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