Shewanella acanthi: K0H61_02695
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Entry
K0H61_02695 CDS
T09152
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sach
Shewanella acanthi
Pathway
sach03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sach00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0H61_02695 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sach03019
]
K0H61_02695 (rnr)
03016 Transfer RNA biogenesis [BR:
sach03016
]
K0H61_02695 (rnr)
Enzymes [BR:
sach01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
K0H61_02695 (rnr)
Messenger RNA biogenesis [BR:
sach03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K0H61_02695 (rnr)
Transfer RNA biogenesis [BR:
sach03016
]
Prokaryotic type
tRNA degradation factors
K0H61_02695 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
TFIIE_beta
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
QYJ79375
LinkDB
All DBs
Position
623992..626436
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AA seq
814 aa
AA seq
DB search
MIKDPHFEREQDKYENPIPSREYIIEYLRSQKSPLTRDSIAVALKIHEEDQLEALRRRLR
AMERDGELVFTRGQSYGLPERMDLISGTVLGHREGYGFFKPDEGGDDLFISNRDMLMYFH
GDKVLAQKAGVDRKGRREARLVRLIQPRSAAIVGRYHVDSGMAFVIADDKRITQEILIAN
EDRNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHKWSAV
IEKKLRRIPDEVTEADKIGRVDLRDLPLVTIDGEDARDFDDAVYAEVKPSGGWRLWVAIA
DVSYYVRTDSALDTEARSRGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTIS
AKGKLSGYKFYPAVMHSHARFTYTQVAAMLEGGPIAPEHEALFPHLQCLQSLYLALDEQR
AERGAIAFETLETQFIFNEQRKIDKIVPRARNQAHKIIEECMILANVSAAKFVKKHKGEI
LYRVHEPPSEMRLANFKEFLAERGLSMSGGLEPTPADYQNVMLQISERPDAELIQVMLLR
SMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEQGEANEKWTSDG
GYHYQLDELDQLGEECSNTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTNFGLF
VRLNDLFIDGLVHISSLGSDYYQFDPMRQRLLGENTGQVYQVGDPVTVKVAAVNLDDRQI
DLIMLGEGGKGRRKSAPSREKPMTARERVNREGAKMARAAKGGTGVGASRSSADKSRADG
SKPSGAKPKSKSGSKPKKNSAKKPKAAKRSTRKK
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgataaaagaccctcattttgagcgtgaacaggataagtacgaaaaccctatcccaagc
cgcgagtatattattgaatacttgcgctcccaaaaatcacccctcacccgtgacagcatc
gctgttgcattgaagatccacgaagaagatcaactcgaagccctacgtcgccgcttacgt
gcgatggagcgtgacggtgagttggtgtttacccgtggtcaaagctacggcttgcccgaa
agaatggatcttatctctggtaccgtattagggcacagggaagggtatggcttctttaag
cctgatgaaggtggtgatgatttatttatctcgaacagagatatgttgatgtatttccat
ggcgataaagtgctggcacaaaaagccggcgttgaccgtaaaggtcgccgtgaagcgcgt
ctcgttcgtttgatccagcctcgcagtgctgcgattgttggccgttaccatgttgatagt
ggcatggcatttgtgattgccgatgataagcgcattacccaagagattttaatcgccaac
gaagaccgtaatggcgcacgccaaggtgatgtggtcgtcgttgaactcacacgtcgtcct
gggcgatttgtaaaagccgccggtaaagtcaccgaagttttaggtaagcaaatggcgccg
gggatggagattgaaatcgccctgcgtaattacgatttaccccataaatggtcagcggtt
attgagaaaaaactgcgccggatccccgatgaagtgactgaagcggataagattggccgc
gtcgatctacgtgatctgccgttagtgactattgatggtgaagatgcccgcgactttgac
gatgcagtctatgcggaagtgaaacccagtggtggctggcgtctgtgggtggcgattgct
gatgtaagttactatgttcgcaccgattcagcgctcgataccgaagcacgttcccgcggt
aactctgtgtatttcccatcgcaggttatcccaatgctgccggagaaaatctccaacggc
ctgtgttcgctcaatccccatgtagaccgcctgtgtatggtggcggagatgacgatttcg
gccaagggtaagctctcgggttacaagttctacccggcggtaatgcattctcacgcgcgt
tttacctatacccaagtggcggcaatgctcgaaggcggtccaatcgcccctgagcacgag
gcattattcccgcacctgcaatgtttgcagtcactgtatttagcgctcgatgagcagcgc
gccgagcgcggcgcgattgcctttgaaaccttagaaacccagtttatttttaacgagcag
cgtaagatcgataaaattgtgccaagggcgcgtaaccaagcccataagatcatcgaagaa
tgcatgattttggctaacgtctctgcggctaagttcgtgaaaaagcacaaaggtgaaatc
ctttatcgggttcacgaacccccgtcagagatgcgattggcgaactttaaagagttcctt
gctgagcgcggattaagcatgagtggtggccttgagccaacccctgcagattatcaaaac
gtgatgctgcagattagcgagcgccccgatgctgagcttattcaggtgatgctgctgcgt
tctatgcgccaagcaatctacacaccggataatgaaggccactttggtctggcactggag
gagtatgctcactttacctcgccaattcgccgttacccagacttagtgctacaccgcgtg
atccgctatttactggcgaaggagcagggtgaagccaatgagaagtggacgagcgatggt
ggttaccattatcagctcgatgagctagaccaacttggtgaagagtgttctaacactgag
cgccgcgcagatgaggcaacgcgcgatgtaagcgactggttgaaatgtgaatttatgcag
gatcacgtgggtgacaccttcgaagctgtgattgcttcggtgactaacttcggcctgttt
gtgcgcttaaatgacctctttatcgatggtttagtgcatatttcgagtctgggcagtgat
tactatcagtttgatcctatgcgtcagcgtttactgggtgagaacaccggtcaggtttat
caagttggcgatcccgtgacagtaaaagtggccgcggtgaatctggatgacagacaaatc
gatttgattatgcttggcgagggcggtaaaggtcgtcgtaaatccgcgccgagccgtgaa
aagccaatgaccgcccgtgagcgtgttaaccgtgaaggtgccaaaatggcgcgtgcggct
aaaggaggtacgggcgtaggtgcatcacgttcaagcgctgataaatcaagggcggatggg
agtaagccaagtggcgcaaaacctaagtcaaagtctggcagcaaaccaaagaaaaattcg
gctaaaaagccaaaggccgctaagcggagcacgagaaagaagtaa
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