Shewanella acanthi: K0H61_04370
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Entry
K0H61_04370 CDS
T09152
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sach
Shewanella acanthi
Pathway
sach03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sach00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0H61_04370 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sach03019
]
K0H61_04370 (pnp)
03016 Transfer RNA biogenesis [BR:
sach03016
]
K0H61_04370 (pnp)
Enzymes [BR:
sach01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
K0H61_04370 (pnp)
Messenger RNA biogenesis [BR:
sach03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
K0H61_04370 (pnp)
Transfer RNA biogenesis [BR:
sach03016
]
Prokaryotic type
tRNA degradation factors
K0H61_04370 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
Motif
Other DBs
NCBI-ProteinID:
QYJ79678
LinkDB
All DBs
Position
977557..979656
Genome browser
AA seq
699 aa
AA seq
DB search
MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTV
NYQEKSYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVD
PQIEPDVISMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVNQLATSQLNLVVAG
TESAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAINEFKAEAGKPAWNWTAPVANEA
LVAQVKELAEAGFVEAYQIQVKQERYAQVAVVKAAAKEALLATNPEVDLREVDGLLGSLE
KKVVRGRIIRGEPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERD
AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEF
PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAI
GSHRDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSN
GEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN
VSDHLELNQEVTVKVMEVDRQGRVRLSIKEAQTKEPAAE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccaattgtaaagagttttgagtatggtcaacatacagtcaccctggaaacaggt
gtaatcgcacgtcaagcagacgctgccgttttagccagcatgggtgacacgacagtgtta
gttaccgttgttggtaaaaaagaagcagaagcgggccgtgattttttccctctgactgtt
aactatcaagaaaagagctacgcagcgggtaaaattcctggtggtttctttaagcgtgaa
ggccgtccttcagaagatgaaacattaatcgctcgtctgatcgaccgtccaattcgtcct
cttttccctaatggtttcacaaacgaagttcaagtgatcatcactgtagtgtctgtcgat
ccacaaatcgagccagatgttatttcgatgattggtacttcggctgcgctagccatttcg
ggtatcccatttagcggtccattaggtgcggctcgtgtggggtacatcaatggcgaatat
gtgctgaacccaactgttaatcagttagcgacaagccaattaaacctagttgttgctggt
actgaaagcgcagtattgatggttgagtcagaagcccaagcattacctgaggaagtgatg
ttaggctcagtggtttacggccatgaccaacaacaagttgtgatcaaagccatcaacgaa
ttcaaagcagaagcaggcaaaccagcgtggaactggactgcacctgttgcgaatgaagcc
ttagttgctcaagttaaagaattagctgaagcaggctttgttgaagcgtaccaaatccaa
gttaaacaagagcgttatgctcaagttgctgtggttaaagctgctgctaaagaagcgttg
ctggctactaacccagaagtggatttacgcgaagttgacggcctgcttggtagcttagaa
aagaaagtggttcgtggccgcattattcgtggtgagccgcgtatcgacggtcgtgagcca
gatatggttcgtgcgttaagcgttttagctggcgtattaccacgtacccacggtagtgca
ctgttcacccgtggcgaaacccaagcgcttgtaacttgtacattaggtactgagcgtgat
gcacagaagatcgacagcatcatgggtgagcgtactaaccgctttatgctgcactacaac
ttccctccatactctgtgggtgaaacaggtatggtgggctcaccaaaacgccgcgaaatc
ggtcacggtaagcttgcatggcgcggtatcaatgcggttatgccaacggctgaagagttc
ccgtacagcgttcgtgtcgtatctgaaatcactgaatcaaacggttcaagctctatggct
tcagtgtgtggtacttctctagcactgatggacgcgggtgtaccgatcaagacgtctgta
gcgggtatcgctatgggtctagtaaaagaaggtgatgactttgttgttctgtctgacatc
ctaggtgacgaagaccacttaggtgatatggacttcaaagtagcgggtacccgtgacggt
gtgactgcactgcaaatggatatcaagatcgaaggtatcactaaagaaatcatggaaatt
gcactgcaacaagcctacggcgcacgtgtacatatcctgaacgtgatggatcaagcgatt
ggttcacaccgcgatgatatctctgaccacgctccacgtatcactactatcaagatcaac
ccagagaagatccgtgatgttatcggtaaaggcggcgcggtaattcgtgcactgactgaa
gaaaccggcactactatcgaactggaagatgacggtactgtgaagattgcttcttcgaat
ggtgaagcgaccaaagaagcaatacgtcgtatcgaagaaatcacctcagaagttgaagtg
ggtcgtatctacaacggtaaagttatccgtatcgttgacttcggtgcctttgttaacatt
ctgccaggtaaagacggtttagtgcacatttcgcaaatcagcgatgagcgtgttgcaaac
gtatctgaccaccttgaactgaaccaagaagttaccgttaaggtgatggaagtggaccgt
caaggtcgcgtacgtctgtcaattaaagaagcgcaaactaaagagcctgctgcagagtaa
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