Shewanella acanthi: K0H61_04930
Help
Entry
K0H61_04930 CDS
T09152
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sach
Shewanella acanthi
Pathway
sach03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sach00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0H61_04930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sach03019
]
K0H61_04930
Enzymes [BR:
sach01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0H61_04930
Messenger RNA biogenesis [BR:
sach03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0H61_04930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
DegT_DnrJ_EryC1
ERCC3_RAD25_C
GWD1_pHisD
Motif
Other DBs
NCBI-ProteinID:
QYJ79774
LinkDB
All DBs
Position
1108205..1109446
Genome browser
AA seq
413 aa
AA seq
DB search
MSFSALSLTPQLIDTLAESGYQQPTPIQFEAIPAILAKQDILACAQTGTGKTAAFALPIL
QQLLAEEVPFVSAKAIKALVLVPTRELAVQVQQSFVKYAKGTDIKVGIAYGGVSIDAQQA
VFKAGIDILVATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEINAVLKQVPSE
RQTLLFSATLDDAIFSLSKSMLRDPKLIEVAKRNSTAAQIEQRVYAIDSDRKTEFVSHLV
RTKNWHQVLIFCRTKQGVDKLVTKLNQLGIVTQAFHGDLSQGAREKVLQDFKLGQVKVLV
ATDVAARGLDIAELQYVINFELPFVAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEV
EAVLDKRLPQQWYPGFEPDFNKMEPDPRRNSKAAQKQRAKKRALGGKLGGKKR
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttagtgcgctatccctcactccccaattaatcgataccttagccgaatcaggt
tatcagcagccaacgccaattcagtttgaggcaatccccgctattttggcaaagcaggat
attttggcctgcgcgcaaaccggcacgggtaaaactgcggcattcgctttacctattttg
cagcaattgcttgcagaagaagtgcctttcgtttctgcgaaagcgatcaaggcattagtg
ttagtgccgacccgagagcttgcggtgcaggtgcagcaaagctttgttaaatatgcaaaa
ggtacggatatcaaagtggggattgcctatggtggtgtgagtattgatgcgcagcaggcg
gtgtttaaggcgggaatcgatatcttggtcgccacacctggccgccttttggatcacctg
cgtcagggcgcgctcagtctaaaacaacttagcgtgttagtgtttgacgaagccgaccgt
atgctcgacatgggctttatggatgaaatcaacgccgtgctaaagcaagtgccctcagaa
agacaaaccctcttattttcggcgactttagatgatgccatttttagtctaagtaagagt
atgttacgtgatcctaagctgattgaagtggcaaaacgtaactccacagctgcgcagatt
gagcagcgggtttatgctatcgatagcgatcgtaaaaccgagtttgttagccatttagtg
cgcactaaaaattggcatcaagtactgattttttgccgcactaagcagggcgttgataag
ttagtcaccaagcttaatcagctcggtattgtcacccaagccttccatggggatttatcc
cagggcgctcgcgagaaggtgctgcaggactttaaacttggccaagtgaaggtgttggta
gcgaccgatgttgctgctagggggttagatattgctgagcttcagtatgtgattaacttt
gagctgccctttgtggctgaagattatattcaccgtatcggccgcaccggtcgcgcgggg
agtgcgggtcttgcgattaccttgttcagccaagaagatgccctgctgcttgaagaggtt
gaagccgtgctcgataagcgcttaccacagcagtggtatccaggttttgagcctgacttt
aacaaaatggagcctgatcccagacgtaacagcaaagctgcccaaaaacaacgagcaaaa
aaacgcgcccttggtggtaaattaggtggcaaaaagcgttaa
DBGET
integrated database retrieval system
