Shewanella acanthi: K0H61_07475
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Entry
K0H61_07475 CDS
T09152
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sach
Shewanella acanthi
Brite
KEGG Orthology (KO) [BR:
sach00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sach03032
]
K0H61_07475 (topA)
03400 DNA repair and recombination proteins [BR:
sach03400
]
K0H61_07475 (topA)
Enzymes [BR:
sach01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
K0H61_07475 (topA)
DNA replication proteins [BR:
sach03032
]
Prokaryotic type
DNA Topoisomerases
K0H61_07475 (topA)
DNA repair and recombination proteins [BR:
sach03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
K0H61_07475 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
DUF2399
DUF4355
Motif
Other DBs
NCBI-ProteinID:
QYJ80206
LinkDB
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Position
1677970..1680609
Genome browser
AA seq
879 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKEFIVKSSVGHIRDLPTSSSSEGNEKVKSAAEVKKMSP
EEKARYKKVKDQQALVSRMGVNPEKDWAAKYQILPGKEKVVKELQALADSADQIYLATDL
DREGEAIAWHLQEVIGGDPSRYQRVVFNEITKSAIQDAFSKPSSLDTNMVNAQQARRFLD
RVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVEREGEIKAFVPEEFWDVHADLNTPAGQ
ALRMEVVKQGDKAFEPINEQQALAAVQSLSSASFKVLAREDKATQSKPSAPFITSTLQQA
ASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEALDSVRDMIGKEYGAKYLPAEP
IRYGSKEGAQEAHEAIRPSNVLVEAAALSDMERDAQRLYELIWRQFVSCQMTPAQYDATK
LTVKAGDYELKATGRTLRFDGWTRVQTAIKKKNEEDNTLPVVNEGDELSLIELDPKQHFT
KPPARYSEASLVKELEKRGIGRPSTYATIISTIQERGYVRVENRRFYAEKMGEIVSERLV
GSFAELMSYDFTASMEQTLDDVANGQLDWKKVLDGFYSDFTKQLDKAELAPEEGGMRLNQ
MVMTNIKCPTCGRPMGIRTGTTGVFLGCSGYELPPKERCKTTMNLTPGIEAISDSEDAET
EALRAKHRCGICGTAMDSYLIDEKRKLHVCGNNPICEGYEVEEGQFKIKGYEGPLIECDR
CGHDMELKNGRFGKYFGCTNTECKNTRKLLKNGEAAPPKEDPIYLPELKCSKSDAHFVLR
DGAAGIFLAASTFPKSRETRAPLVEELVKYRELLWPKYQYLADAPVSDDEGNKAAVKFSR
KTKEQYVATEIDGKATGWTAHYVNGKWVSESSAKKAKKA
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctagttattgtcgaatcaccggccaaagctaagactattaataaatat
cttggcaaagaattcatcgttaaatcgagcgtgggtcatatccgtgacttacccacatct
tcatcatccgaaggcaatgagaaagttaaatccgccgctgaagtgaaaaagatgtcgcct
gaagaaaaggctcgctataaaaaggtgaaggatcagcaagcgctggtgtcgcgtatgggc
gtgaatcctgaaaaggattgggcggcaaaatatcaaattcttccaggtaaagaaaaggtg
gtcaaagagctacaagccctagctgattccgctgatcaaatttaccttgcaacggacttg
gatcgtgaaggggaagctatcgcctggcatttgcaggaggtgataggtggcgatccttca
cggtatcagcgtgtagtctttaacgaaattaccaaatccgcgattcaagacgcctttagt
aagccttcatcactcgacactaatatggtcaatgcacagcaggcgcgtcgttttcttgat
cgcgtggttggctttatggtgtcgccactattgtggaaaaaggttgcccgtggtttatcg
gctggccgtgtgcaatcggttgcggtgcgtttagtggttgagcgtgaaggcgaaattaaa
gccttcgttccagaagaattttgggatgttcacgccgatttaaatactccagcaggccaa
gctctgcgaatggaagtggtaaagcaaggtgacaaagcctttgagcctatcaatgagcag
caagcgttagcggcggtgcaatcattatcttcggcaagctttaaggttctagcccgtgaa
gataaagccacccaaagtaaaccatctgcccctttcattacctcaaccctgcagcaggcg
gccagtacccgtttaggttttggggtcaagaaaaccatgatgatggctcagcgtttatat
gaagctggacatatcacctatatgcgtactgactcgactaacctgagccaagaagcgctg
gatagtgttcgcgacatgattggaaaggaatacggcgccaagtatttacccgcagagccg
attcgttatggttctaaagaaggcgcacaagaggcccacgaagcgattcgaccatcaaat
gtattagttgaagctgcggcattatccgatatggaacgagatgcacagcgcttatatgaa
ctgatttggcgccagtttgtatcttgtcagatgacacctgcccaatacgatgccaccaag
ttaacggtcaaagccggtgattatgaactcaaagcaaccggtcgtaccttaagatttgac
ggttggacacgtgttcaaacggcaattaagaagaaaaatgaagaagataacaccctacct
gttgttaacgaaggtgatgagttatcgctcatcgaattagatcctaagcagcattttacg
aagccaccggcacgttatagcgaagcgtcattggtgaaagaattagagaagcgtggtatc
ggtcgtccatcaacgtacgccactattatctcgaccatccaggaacgtggttacgtcaga
gttgagaaccgtcgtttttacgctgagaaaatgggtgaaatcgtgagtgagcgtttggtt
ggcagttttgctgagctgatgagctatgattttactgcaagtatggagcagacactagac
gatgttgccaacggtcagctcgactggaaaaaagtactcgacggtttctatagcgacttt
actaagcagctcgataaagccgagctagcgcccgaagagggcggtatgcgtttaaaccaa
atggtaatgacgaatatcaaatgtccaacctgcggtcgtccaatggggattagaaccggt
actaccggcgtgttcttaggttgctcaggctacgaattaccgcctaaagagcgctgtaaa
actacgatgaatctcacgccaggcattgaagccatcagtgacagtgaagatgctgaaact
gaagccctgcgtgcaaaacaccgctgtggtatttgcggtactgcgatggacagctactta
atcgatgagaaacgtaagctgcacgtttgtggtaataacccgatttgtgaaggctacgaa
gtcgaggaagggcagtttaagatcaaagggtatgaaggtccattgattgagtgtgaccgc
tgtggtcacgatatggagctcaaaaacggtcgctttggcaagtactttgggtgtacgaac
actgaatgtaaaaatacccgtaagctgttgaaaaacggtgaagcagcaccaccaaaagaa
gaccctatctacttgcctgaacttaaatgtagcaagtccgatgcacattttgtattgcgt
gacggtgcggctgggattttcttagcagcaagtaccttccctaaatcccgtgaaactcgg
gcaccattagtggaagagttagtgaaataccgtgagcttttgtggcctaaataccagtat
ctagccgatgcgcccgtctctgacgatgaaggtaataaggcggcggtgaaatttagccgt
aagaccaaagagcaatacgttgcgaccgaaattgatggtaaagcgacaggttggacagcg
cattatgtgaatggcaagtgggtgagtgaatcctctgctaaaaaagcgaaaaaggcttaa
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