Shewanella acanthi: K0H61_08070
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Entry
K0H61_08070 CDS
T09152
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sach
Shewanella acanthi
Pathway
sach03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sach00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K0H61_08070 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sach03400
]
K0H61_08070 (mfd)
Enzymes [BR:
sach01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K0H61_08070 (mfd)
DNA repair and recombination proteins [BR:
sach03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K0H61_08070 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AAA_30
TraI_hel_assoc_N
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QYJ80318
LinkDB
All DBs
Position
complement(1830379..1833864)
Genome browser
AA seq
1161 aa
AA seq
DB search
MTHISALTPPVVKNGNQMQTLSCIPGVSQAITLASLIKQHSGTTLIVTSDTPSALTIESE
LNYLLAKTAIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQISQAEHSVVIVPVSTLMM
RLPPKAYLSANVFVLKKGDKYQLHDVRQHLTDTGYHLVEQVYEHGEFAIRGSILDIFPTG
VNQPLRIELFDDEVETIRHFDPETQRSSTPVDAVKLLPAKEFPTDSAAIEGFRQRYRRRF
EVIVKEPESVYQLVSRHLMPAGIENYLPLFFDEVATLFDYLPKETQLVTLGDIEKSARSH
LHEVETRYEDRRVDPLRPLLSPKELYLLIEELFAAFKPLPRYQLISPTVEQDQSKAVVID
ASLLPDISANHKLKQPLIALQDYALHAPRLLFSAESEGRREALLELLSKIQLKPTLFAHF
DEFIQSDAKLGLIVSPLSRGSLLNLGKQTAISIICETELFGQRISQQRRREKQRQISNDT
LIKNLAELKVGQPIVHLEHGVALYQGLVTLDTGGIVAEYLQLEYSGGDKLYVPVSNLHMI
SRYSVGADGEAHLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQSRPGESCEINDEE
YAQFAQGFPFEETVDQETAIQAVLEDMKSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNAG
KQVVVLVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQNQVLKQLEEGKVDIVIG
THKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSG
MRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCAQDI
STLLPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERAD
TFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQD
LEIRGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMELRIP
ALLPEDYVGDVNIRLSLYKRIASCDSEAALDELKVELIDRFGLLPDATKNLMEMTLYKHQ
ATALGATKIEVHAKGGSIEFSQDHVVDPGFIIGLLQSQPQIYRMDGPNKLKFILNAETAK
DRLALVKLLLEQLSQHRLGDK
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgacgcacatttcagccctcacgccgcccgtggtaaaaaatggcaatcagatgcaaacc
ctgtcctgtattcctggggttagccaagccatcaccctcgcaagccttattaagcagcat
tcaggtaccacactcattgtcactagcgataccccaagtgccttaacgatagaatctgag
ctgaattacttactcgccaaaacagcgattaaggtgcggctatttccggaccgtgaaacc
ctaccctatgatagtttttcaccccatcaggatttgatctcacagcgtttagaaaccctg
tcacagatttcacaagccgaacacagtgtggtgatagtccccgtcagtactttgatgatg
cgtctgccacccaaggcctatttgagcgctaacgtatttgtacttaaaaaaggcgataaa
tatcagctgcatgatgtgcgtcagcatttaacagataccggttatcacttggttgaacag
gtttatgagcacggcgagtttgccatccgcggctcaattctcgatatcttcccaacgggc
gtaaaccagccgctgcggattgaactctttgatgatgaagtcgaaaccattcgccatttc
gatcctgaaacccaacgttcatcaacacctgtggatgctgtaaaactattgcctgctaag
gagtttccgaccgacagtgcggccatcgaaggctttagacaaagataccgtcgccgcttc
gaggtgattgtaaaagagccggaatccgtctatcagttagtgagccgtcatctgatgcct
gcgggtatcgaaaattacctgccgctgtttttcgatgaggttgcgaccctgttcgattat
ctgccaaaagaaacgcagcttgttacccttggggatattgaaaagtccgcccgcagtcat
ttgcatgaagtcgaaacccgctatgaagacagacgggtcgatccgctaaggccgctactc
tcccccaaagagttgtacctgttaattgaagagctttttgctgccttcaagccgctgccg
cgctatcagcttattagcccaacagtagagcaggatcaaagcaaggcggtggtgatagat
gcgagtctattacccgatatcagcgctaaccataagctaaaacagccattaattgcgctg
caggattacgccctgcacgcgcccaggttgctatttagcgccgagtccgaaggtcgccgc
gaggccctgctcgaactcttaagcaaaattcagttaaaaccaaccctatttgctcacttc
gatgaatttattcaaagcgatgccaagctaggccttatcgtctcgccgctgtcccgcggc
agtttgcttaacctaggcaaacaaacggcaatcagcattatctgtgagaccgagcttttt
gggcagcgtatttcacagcagcgccggcgcgaaaaacagcgtcagatcagtaacgatacc
ctgatcaaaaacctagccgaactaaaagtcggtcagcctattgttcacctcgagcacggc
gtcgcgctctaccaaggcctagtcaccttagataccggcgggatagttgccgaatacctg
cagctcgaatattcgggcggcgataaactctatgtgcctgtatctaatctgcacatgatc
agccgctacagcgtcggcgccgacggtgaagcgcatcttaataaactcggtaacgacact
tgggctaaggcgaagaataaagccatcgaaaaaatccgcgatgtcgccgccgaattgctc
gacgtgtacgcccgcagacagtcgcgaccaggcgagagctgtgaaattaacgatgaagaa
tatgcccagttcgcccaaggattccccttcgaggaaaccgttgatcaagaaaccgcgatt
caagccgtgctcgaagacatgaaatcgccaattgccatggatagactcgtctgtggtgac
gttggctttggtaaaaccgaagtggcgatgcgcgccgcctttgtggcggtcaatgcgggt
aaacaagtggttgttttggtgccaaccaccctactcgcccagcagcactatgaaaacttt
aaggacagatttgccgactggcctgttgtgactgaagtgatgtcacgctttagaacggcc
aaagagcaaaaccaagtattaaagcagcttgaagaaggcaaagtggatatcgtgattggt
acccacaaactgctgcaatctgaagcgaagtttgaaaacctcgggcttctcatcatcgac
gaagaacacagattcggtgtccgtcaaaaggaaaagattaaagcgctgcgcgccaacgtg
gatattttaaccctgacggcaacaccgattccccgtaccttaaatatggcgatgtcgggg
atgcgcgacctatccattatcgccaccccgcccgcgaagcgtttagcggtgaagaccttt
gtgcgtgagtccgatcccgccacggtgcgcgaggcgatcttgagggaaattctccgtggt
ggccaggtgtattacctgcacaacaatgtcgaaaccatcgaaaaatgcgctcaagacatc
agcaccttgctgccagaagcgcgggtggtggtcgcccacggtcaaatgcgtgagcgggat
cttgagcgggtaatgtcggacttttatcatcaacgattcaacgtcttagtctgtaccact
attatcgaaaccggtatcgatgtccccagcgccaacactattattattgagcgtgccgat
acctttggtttagcgcagttacaccaattgcgtggccgggtaggccgctcacaccatcag
gcctatgcctatttgatgacgccgcatcctaaacgcatgacaaccgatgcccgcaagcgc
ttagaagccatcgatgcccttgaagacttaggtgcaggctttatgttagcgacccaagac
ttagaaatccgcggcgcaggtgagctgctcggggatgaacaaagcggccatatttccaaa
atcggctttagcctctatatggaaatgctggaatcggccgttaaagccctcaagcaaggt
aaagagccgtcgctggcgcagatgctcaatcagcagtgtgagatggaactgagaattccg
gcgctactgcccgaggactatgtgggtgatgtgaatatccgtctgtcactctataagcgt
attgcgagttgcgacagcgaagcggcgctcgatgaactcaaagtcgaacttattgaccgc
tttggtcttttgcccgatgccaccaaaaacctgatggaaatgaccctgtataaacatcag
gcaacagcgctaggggcaactaaaattgaagtgcatgccaagggcggcagcattgaattt
agccaagatcatgtggttgatccgggctttatcattggattgctgcaaagccaaccacaa
atctatcgtatggatgggccgaataagctaaagttcatcttaaacgccgaaacggcaaag
gacagactcgcgctcgtcaaactcttgcttgaacaattatcgcaacatcgtcttggagat
aaatag
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