Shewanella acanthi: K0H61_08300
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Entry
K0H61_08300 CDS
T09152
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
sach
Shewanella acanthi
Pathway
sach03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sach00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K0H61_08300 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sach03400
]
K0H61_08300 (recB)
Enzymes [BR:
sach01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K0H61_08300 (recB)
DNA repair and recombination proteins [BR:
sach03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K0H61_08300 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QYJ80359
LinkDB
All DBs
Position
complement(1881566..1885297)
Genome browser
AA seq
1243 aa
AA seq
DB search
MSTANNKDISAQPLNPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGLSAPLTCEQ
ILVVTFTNAATEELRDRIRKRIQLAYQCFLGLQIDDPFVQALFDNTPESERGIALRRFDL
ALKSLDEAAIFTIHGFCQRILSDLAFESSLLFESDFTLDDSEFLHHAVRDFWRETCYPLP
GFLAQIVAKAFGEPDGVVKKLRPLIGASTAKPLKPVPAFEKLAESLSQSLERFKLAWPRG
RDGLLALLHDLPLNGVTFGKASDNFPKLAAMFDALDNWYSFGFGLPPVEVLKKLSLSQLK
LNKGGVIPSAQEAPLLDHMEQLALLIEDIEPAFLYSAKVGISRRFAEQKQQQNVLTPDDL
LTTLATALTQNAATLPSAVAKRFPVALIDEFQDTDPLQFDIFSTIYQSKHQLDEVSDPKT
KLSLLMIGDPKQAIYAFRGADIYTYIEARKETEEHYFLDTNYRSNANLVAGVNHLFAQHP
NPFISQAIPFDRVNTPPSAANKCLVEASGDNSALRLKLLSEGESGLNKTTARQQLAQDAA
SEITRLLTEAANGECFTPKGPLKAKDIAILVRDRNEAAIMKAALSKRGIGAVFLSRDSVF
NTLEAQEMALILRALAHPKDERALRSALATSLLGFNAEDIHAFNQDEERRQGLLEQFFEL
NQTWLRRGIMPALLSLAQQTQMIERLLKPTAPASLTYDDPALFCDNENSGERRLTDFRHL
AELLQQKATELDGINALLNWFEQQLIDGNSSDEQQLRVESEQNLVQIVTIHKSKGLEYPV
CFIPFVSLARDSSRKPTPMLYHRTTDDGSQQLVWDIEGTNEGYELAKAEILAEDLRLLYV
ALTRPVYVCYLYIANHSRQLKDGIKSFIHETAIGYLLGIDDKDCDFSRLANAAQSLINGV
DAISLSEIDIHAIDTKLPSAASEHAALGAKVVSRKYTTPWRVGSYSGLIKNAGHGKAAPG
ADDEGIEAFGVEVGFQSLGEFVEPQIETDLSITPALNRFNFERGANAGSFMHLVLELIDF
TNAETELPAALPKAMLQYGIGEEWLEVLQDWYLDVLRTPFAADDSVNADLCLAKLAPSQT
LVEMEFYLPLSRLKDQQLNQLLQQHGYNAALNFEELKGMLKGFIDLTFEYKGKFYIADYK
SNHLGDNVTAYSHIALKTAIGDHHYDLQYILYTLALHRYLSLRLNHYDYDAHIGGCYYLF
LRGMSAQFQGSGVYYDKPPKALILALDALFQESDIIEQRGALA
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atgagtactgcaaacaacaaagacatcagtgcacaaccgctcaatccgttgaccttgccc
tttggcggcagtcgcttgattgaggccagtgcgggtacgggtaaaacctatactatttca
gggctttatttacgtttactcctcggtgatggcttaagcgcgccgcttacctgcgaacaa
atcctagtggtcacctttaccaatgccgccacagaggaactcagggacagaattcgtaaa
cgtattcagctcgcctaccaatgctttttaggcctgcaaatcgacgatccctttgttcaa
gcgctatttgataacacccctgagtctgagcgcggcattgccctgcgccgcttcgattta
gcgctaaaatccctcgatgaggcggccattttcaccattcatggcttctgtcagcgaatt
ttatcggatcttgcctttgagtcatcactgctatttgagtcagactttaccttagatgac
agcgaatttttgcaccatgcggtgcgggatttttggcgtgagacctgttatcccttaccg
ggttttttagcccagattgttgctaaagcctttggtgagcccgatggtgtggtgaagaaa
ttgcgcccgctgattggcgcaagtaccgccaagcccttaaagcccgtgccggcgtttgaa
aagctcgccgaatcgttaagccaaagtttagagcgctttaaactcgcctggccccgtggc
cgtgacggcctactcgcgttactccacgacctgccgttaaatggcgtgacctttggtaaa
gcaagcgacaattttcctaaacttgccgccatgtttgatgcgcttgataactggtattca
ttcgggttcggtctgccccccgttgaagtactcaaaaaactgtctttatcgcaacttaaa
ctcaataagggtggcgttatccctagcgcgcaggaagcaccgctgctggatcatatggag
caactcgccctccttatcgaggatattgagcccgcctttttatacagtgccaaagtgggc
ataagccgccgttttgccgagcaaaaacagcaacagaatgtgcttacgcccgacgatctg
ctgaccacgctcgccaccgccttaactcaaaatgccgccaccttgccaagcgcggtagcc
aagcgtttccccgtggcgctcatcgatgagtttcaggatacggatccactgcagtttgac
attttttcaacgatttatcagagcaaacatcaactcgatgaagtgagcgatcctaagact
aaactcagcttactgatgattggcgatcccaagcaggccatttatgcctttcgtggtgcc
gatatttatacctatatcgaagcccgtaaggaaaccgaggagcactatttcctcgatact
aactatcgctccaatgcgaatttagtggctggggtgaatcatctatttgcccagcatcca
aatccttttatcagtcaggccattcccttcgatcgggttaacacgccgccaagtgccgcg
aataagtgcctcgttgaagcaagcggcgacaactcggcgctaaggttaaagctgttaagt
gaaggtgagagtggcctgaacaagaccacggcgcgccaacaactggcacaggatgcggcg
agtgaaatcacgcgtctgttgactgaggcggccaatggcgagtgctttaccccaaaagga
ccacttaaagccaaggacattgctattctagtccgcgatcgcaatgaagcggccattatg
aaggcagccttaagcaagcgaggcataggcgcagtatttttaagccgtgacagtgtattc
aataccctagaggcacaggagatggcgctgatcctccgtgctctggctcatcctaaggat
gagcgcgccctgcgaagtgccctcgccacgtcactccttggctttaacgccgaagatatt
catgccttcaatcaggatgaagaacgcagacaagggttactcgagcaattttttgaactt
aaccaaacctggcttcgacgcggcatcatgcccgcactcttaagccttgcccagcaaacc
cagatgattgagcgcctgttaaagcccacggcgcccgcaagtttaacctatgatgacccc
gcacttttctgcgataacgaaaacagcggtgaacgccgcttaacggattttcgtcacctt
gccgaattgctacaacaaaaagccaccgaactcgatggcatcaatgccctactcaattgg
tttgagcagcaactgattgacggtaacagcagtgacgagcagcagcttcgcgtcgagagt
gagcaaaatctggtgcaaatcgtcaccatccataagagtaaagggcttgaatatcccgtt
tgttttatcccctttgtcagccttgcacgggacagcagtcgtaagccaacgcctatgctg
tatcaccgaacgactgacgatggcagtcaacaattagtttgggatattgaaggcactaat
gaaggctatgaactggcgaaggcagagatcctcgccgaggatcttcgcctgctctatgtg
gcgctaacccgccccgtgtatgtgtgttacctctatattgctaaccacagccgtcaactc
aaggatggcattaaaagttttatccacgagaccgccatcggctatttgcttggcatcgat
gataaggattgtgatttttccagattagccaacgccgcacaatccctcattaacggggtg
gatgcaattagcctaagcgagattgatatccacgcaattgacactaaattgccaagcgca
gcgtctgagcacgcggcacttggtgctaaagtggttagccgcaaatacaccacaccctgg
cgagtcggcagttattctgggctgattaaaaacgctggccatggcaaagccgcacccggc
gccgacgatgaagggattgaagcctttggcgttgaggtcggcttccaaagcctaggtgag
tttgttgagccccaaatagaaactgatctttctatcacacctgcgctcaatcgctttaat
ttcgagcgcggcgccaatgcgggtagctttatgcacttagtgctggaactcattgatttt
accaacgcagaaactgagctccctgcagccttacctaaggcgatgctgcaatacggtatt
ggcgaggaatggctggaagtacttcaagattggtatctcgatgtattaaggacgccgttt
gccgcggacgacagtgtcaatgccgacctttgccttgcaaaattagccccaagccaaacc
ttggttgagatggagttttacctgccgctcagtcgccttaaggatcagcagctcaaccag
ctattacagcaacatggctataacgctgcgcttaatttcgaagaactcaagggcatgctt
aagggttttatcgacttaacttttgaatataaggggaagttttatattgccgactataag
tctaaccaccttggcgacaacgttaccgcctatagccacatcgcattaaagacggcgata
ggcgatcatcactacgatctgcaatacattctttacacgcttgcactgcaccgctattta
agcctaaggcttaatcactacgactatgacgcccatattggcggctgttattacttattt
ttgcggggaatgtcggcgcagttccagggttctggtgtgtactatgataagccgccaaag
gcacttattttagcacttgatgctctctttcaagagtcagacatcatcgaacaacgagga
gccttggcatga
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