Shewanella acanthi: K0H61_09365
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Entry
K0H61_09365 CDS
T09152
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sach
Shewanella acanthi
Brite
KEGG Orthology (KO) [BR:
sach00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sach03019
]
K0H61_09365 (hrpA)
Enzymes [BR:
sach01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K0H61_09365 (hrpA)
Messenger RNA biogenesis [BR:
sach03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K0H61_09365 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
ResIII
ABC_tran
SLFN-g3_helicase
T2SSE
NACHT
PhoH
TsaE
NTPase_1
AAA_30
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QYJ77371
LinkDB
All DBs
Position
complement(2141667..2145548)
Genome browser
AA seq
1293 aa
AA seq
DB search
MVLNSDTHPLSSAFLKQCFQSDASRIRRRLFKLNKEADSDKKTQELAKLAEQAQAAFEKV
EQRLKARPKIHYPDNLPVSGMRDEIAKAISENQVVIIAGETGSGKTTQLPKICLELGLGS
RGFIGHTQPRRLAARSVASRVAEELQSPLGEVVGFKVRFADALKSESYIKLMTDGILLAE
LTSDRYLDQYDTIIIDEAHERSLNIDFILGYLKQILKKRPDLKVIITSATIDVERFSKHF
NNAPIIEVSGRTYPVETRYRPLVQDSEADLDQIEGIFAAVDELVAEGLGDILIFMNGERE
IRDTAEQLSRRNYRDTEILPLYARLSYGEQSKVFSSHTGRRIVLATNVAETSLTVPGIRY
VIDPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYDEADFNSRPA
FTDPEILRTNLASVILQMLSIGLGDIGAFPFIEPPDARHIRDGFLLLEELQAVKQQKGNL
VLTPLGRQLSQIPVDPRLARMVVESHSLGCLQEVLVIAAGLSIQDPRERPMDKKQASDEA
HRRFADANSDFVGWVNLWQYLKDQQKELSASQFRKKCRDEYLAYLRVREWQDLYTQLKQA
VHDLKWRLNDTPASYDALHRALLSGLLSHIGFKDNNNEYLGARNRKFFVFPGSPLAKKGP
KWIMAAELTETSKLFARCCAKIEPEWLEPLAVHLIKKNHLEPHFEAKQGSVIALENQVLY
GLTVVHRRRVQYGPINPIEAREIFIRSALAEGQLQTKEAFFIANQKLLEDVEALEHKSRR
RDILVDEQVLMDFYEPRIPEGIYNAPKFFTWWKEARRTQPDLLDFNKSLLMQRSADHISA
LDFPDSWHKGNIRLQLSYHFDPAATDDGVSVHIPVALLNQIDDTDFDWLVAGMREEKCVA
LIKSLPKGLRRNFVPAPDYARACVQAMQPFSASMLDAMCKQLLRMSGTKVTPEDFDLTQL
GQHLQVNFKIEDDKGKLIAEGRVLDTLKAELQGVVAKAIRQVADKGIEKEALTEWSFGDL
PKQFEQQKGNYQVRAFPALIDNKDSVAIKLFDDEFEAQSAHRQGLRRLLLLNIPSPVKHL
QQALPNKAKLAMYFNPFGQVQILIDDIIAAAVQQLLDEKALDVRDAAQFEQAKDWVRQEL
NPKAEQIALKVEQILTIYQAIKKRTKGKISLDVAFAMSDIQSQLDHLVFKGFVEACGWER
LSDVGRYLKAIETRIEKLPVDPTRDRLHMQSITKVQDALTAQLAKVPRSQPTPAALIEAR
WMIEEYRVSCFAQALGTAYPISEKRILNHILLS
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
ttggttttgaactctgacactcatccgctatcgagcgcttttctcaagcagtgctttcaa
agtgatgcctcgcggatccgccgccgtttatttaagctcaataaagaagccgattctgat
aagaaaacccaagaattagctaaacttgctgagcaggcgcaagcagcgttcgaaaaggta
gagcaacgtcttaaggctcgccctaaaatccattatcccgacaatttgcccgtgagcggc
atgcgcgatgaaatcgctaaagccatcagtgagaaccaagtcgtgattatcgccggtgaa
acggggtcgggtaaaaccacccagcttcctaaaatctgtttggaattaggcttaggcagc
cgcggatttatcggccatacccaaccaaggcggttagcggcgcgcagtgtggcgagtcgt
gttgccgaagaattgcaaagcccgctcggcgaagtcgtcggctttaaggtgcgtttcgcc
gatgcactcaagagtgagtcctacattaagctgatgaccgacggtattttactggcggag
ctcacatcggatcgctatttggatcaatacgatacaatcattatcgacgaggcgcacgag
cgcagtcttaacatcgattttatcttgggttacttaaagcaaattcttaagaagcgcccc
gatctcaaagttatcatcacctcggcaaccatcgatgtagagcgtttctctaagcatttc
aataatgcgcctattatcgaagtctcgggccgtacctatccggttgaaacccgctatcgc
ccattagtgcaagacagcgaggcagatctcgaccaaatcgaaggtatctttgctgctgtt
gatgagctagtggccgaaggtcttggcgatattctgatttttatgaacggtgagcgtgaa
attcgcgataccgctgagcagttatctcgacgtaattaccgcgataccgagattttgccg
ctgtatgcgcggctttcctacggtgagcaatcgaaggtcttcagtagtcacactggccgt
cgcattgtactggcgactaacgtggctgaaacttcattaactgtgcccggcatccgctat
gtgattgacccaggtacggcgcgtataagccgttatagctaccgcactaaggtgcagcgt
ctgccaattgagccgatttcacaggcgagtgctaatcagcgccaaggtcgctgcggccgt
gttgggccaggtatatgtattcgtttatacgacgaggcggattttaatagccgtccagcc
tttaccgatcctgaaattctgcgaaccaaccttgcatcggttattttgcagatgctctcg
attggcctcggcgatatcggtgcattcccttttattgagccgcccgatgcgcgtcatatc
cgcgatggtttcttactacttgaagaattacaggcggttaagcagcagaagggaaatctg
gtattaacgccgctggggcgtcaattatcgcaaattccggtagacccacgcttggcgcgc
atggtagtcgagagtcatagccttggctgtttacaggaagtgttagtgattgccgcgggc
ctgtcgattcaggatccgcgcgagcgtccgatggataaaaagcaggcgtccgatgaggcc
catcgccgctttgctgacgcaaattccgactttgtcggctgggtcaatctgtggcagtac
ttgaaagatcaacaaaaggaattatccgccagtcagttccgtaaaaagtgccgcgatgaa
tacctagcgtacctgcgcgtgcgagaatggcaggatttatatactcagcttaagcaggcg
gtgcatgaccttaagtggcgtttaaatgatacgccagcaagttacgatgcgctgcaccgc
gcgttgttgtctggactactaagccatatcggctttaaggacaataacaacgaatattta
ggtgcccgtaaccgcaagttttttgtgttcccaggttcgcccttagccaaaaaaggccct
aagtggatcatggccgcggagctgacagaaacatctaaactctttgcccgctgctgcgcc
aaaattgagccagagtggctcgagccattagccgtgcatctgattaaaaagaatcactta
gagccccattttgaggccaagcagggcagtgtgattgcgcttgaaaaccaagtgctctat
ggcctaactgttgtgcaccgccgccgtgtgcaatatggcccgattaatcccattgaagcc
cgtgagatttttatccgtagcgcgctggccgaagggcaactgcagacgaaagaagccttc
tttattgctaaccaaaagctgctcgaggacgttgaagcacttgagcataaatcacgtcgc
cgcgatattttggtggacgagcaagtgctgatggatttctatgagccacgtattcccgag
ggcatttacaatgcgcctaagttttttacctggtggaaggaagcgcgccgcactcagccc
gacttactcgattttaataagtcactgttaatgcagcgcagtgccgatcatatctctgcg
ctcgatttcccggacagttggcataagggcaatatccgcctgcagcttagctatcatttc
gatccggctgccacagatgatggtgtttcagtgcatattccggtggcgctacttaatcaa
atcgatgataccgatttcgattggctggtggcgggaatgcgtgaggagaaatgtgtcgcg
ctaattaaatccctccctaagggattaagacgtaactttgtgcccgcgccggattatgcc
cgcgcctgtgtgcaggcgatgcaaccctttagcgccagtatgctcgatgccatgtgcaaa
cagttactgcgcatgagtggcactaaggtcacgcctgaggattttgatttaactcagcta
gggcagcatttacaggtcaattttaagattgaggacgacaagggtaagttaattgccgaa
ggtcgggtgcttgataccttaaaagccgagctgcagggcgtagtagccaaggccattcgt
caggtagcggataagggcattgagaaagaagcgttgaccgaatggtcatttggcgactta
ccgaaacagtttgagcagcaaaagggtaattatcaggtgcgggcatttcctgcgctaatt
gataataaggattcagttgctatcaaattatttgatgatgaatttgaggcacaatcagcc
caccgccaaggtttaagacgactgctgttactcaatatcccatcaccggtaaaacacctg
cagcaggcgctgcctaacaaggcaaaactggcgatgtattttaatccttttggccaagtg
cagattctgattgatgacattattgcagcggcggtgcagcaacttctcgatgagaaagcg
ctcgatgtgcgtgatgcggcgcagttcgaacaagctaaggattgggtgcgtcaggagctt
aatcctaaggctgaacaaatcgcgttaaaggttgagcaaatcctcacaatttaccaagcg
attaaaaagcgcactaagggtaaaattagtttagatgtcgcctttgcgatgagtgatatt
caaagccaattagaccatttagtgttcaagggatttgttgaggcctgtggctgggaacgg
ttaagcgatgtggggcgctacctaaaggcaattgaaacccgtatcgagaaactgcccgta
gatccgacccgtgaccgtttgcatatgcaaagtatcactaaggtgcaggatgcactcact
gcgcaattggctaaggtgccacgctcgcagcccacccccgctgcactgattgaggcgcgc
tggatgatcgaagaataccgtgtgtcttgctttgcccaggcacttggtaccgcatatccg
atttctgaaaaacggattttaaatcatatcctgctaagttaa
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