Shewanella acanthi: K0H61_13010
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Entry
K0H61_13010 CDS
T09152
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sach
Shewanella acanthi
Pathway
sach02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sach00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K0H61_13010 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sach03021
]
K0H61_13010 (rpoD)
Transcription machinery [BR:
sach03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K0H61_13010 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
QYJ78033
LinkDB
All DBs
Position
3006268..3008121
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AA seq
617 aa
AA seq
DB search
MDHTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVFEEAP
DADDMMMSEDNTDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEIVIA
KRIEEGINTVQSSVAEYPQAIAMILEQYEQYEADELRLSDIISGFVNPDEEDLGPTATHI
GSELSEEDLEDEDDDEDDDEDGDGDGDGDDDGNKGPDPEEARERFSQLRTAYESALKIIE
IKGREHPESVKALFEIGEIFKEFRLVPKQFDRLVKGMRSMMDRVRIQERLLMKLCVEQAK
MPKKNFVKFFTGNETNLDWFDAEKASNKPYAEGLRMVEEDVQRCRSKLAAIEEETGLVIA
AIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR
EPSPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSAT
SESLKSATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPSRSEILKSFLDE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggatcatactccgcagtcgcaactcaagctgttgcttgccaaaggtaaagagcaaggt
tacttaacctatgcagaagtgaacgatcacttacctgcagacatggtcgattcagaccag
atcgaagatattatccagatgataaatgacatgggtatccgcgtatttgaagaagcgccg
gacgccgatgacatgatgatgtcggaagacaacacagacgaagatgcagcggaagaagca
gcggcagcccttgcgacagttgaaagtgagcttggccgtacaaccgacccagtacgtatg
tacatgcgtgaaatgggtactgttgagctactgacccgcgaaggcgaaatcgttatcgct
aagcgcatcgaagaaggcattaacactgttcaaagctctgttgccgaatatccacaagcg
atcgccatgatccttgagcagtacgagcaatacgaagccgacgaactgcgcctgtctgat
attatctctggatttgtaaacccggatgaagaagatttaggtccaactgctacccatatc
ggttctgaattatcggaagaagatcttgaagatgaagacgacgatgaagatgatgacgaa
gatggtgacggtgatggtgacggcgatgacgacggcaataaaggcccagatcctgaagaa
gcccgtgagcgtttcagccaactgcgcaccgcctatgaaagcgccctcaaaatcattgag
atcaaaggtcgcgagcacccagaatcagttaaagcactgtttgaaatcggtgagattttc
aaagagttccgcttagttcccaagcaatttgaccgcctagtgaaaggcatgcgttcaatg
atggatcgcgtgcgtattcaagagcgtctgctgatgaagctttgcgttgaacaggccaaa
atgccgaagaaaaactttgttaagttcttcactggtaacgagaccaatttagattggttc
gatgcagaaaaagcctcaaacaaaccttacgctgaaggcctaagaatggttgaggaagac
gtacagcgttgccgtagcaagctggctgccatcgaagaagaaactggcttagtgattgcc
gccatcaaagacatcaaccgccgtatgtcaatcggtgaagcaaaagctcgccgtgcgaag
aaagaaatggtggaggcaaacttacgtctggtaatttctatcgcgaagaaatacaccaac
cgtggtctgcaattcttagatcttatccaagaaggtaacatcggtctgatgaaagcagta
gataagttcgaataccgtcgtggttacaagttctcgacctatgcgacttggtggatccgt
caggcgatcacccgctctatcgcggaccaagcccgtacaattcgtattccagtacacatg
atcgaaaccatcaacaagctgaaccgtatctctcgccaaatgctgcaggaaatgggccgt
gagccctcacctgaagaacttgcagagcgtatgatgatgccagaagataagatccgtaag
gtactcaaaatcgctaaagagccaatctccatggaaaccccaatcggtgacgatgaagat
tcgcatttaggggactttatcgaggataccaccctcgaattaccactggacagcgctacc
agcgagagcctgaagagcgcgacccatgaggtattagcaggtctgacagcccgtgaagcg
aaagtacttcgcatgcgtttcggtattgatatgaacaccgaccacacgctcgaagaagtg
ggtaaacaatttgacgtgacacgtgagcgtatccgtcagattgaagcgaaggcactgcgt
aaactacgccacccttcacgctcagaaatcctcaagtcattcctagatgaatag
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