Shewanella acanthi: K0H61_15220
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Entry
K0H61_15220 CDS
T09152
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sach
Shewanella acanthi
Pathway
sach03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sach00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0H61_15220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sach03019
]
K0H61_15220
03009 Ribosome biogenesis [BR:
sach03009
]
K0H61_15220
Enzymes [BR:
sach01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0H61_15220
Messenger RNA biogenesis [BR:
sach03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0H61_15220
Ribosome biogenesis [BR:
sach03009
]
Prokaryotic type
rRNA helicases
K0H61_15220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_30
HD_4
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QYJ78430
LinkDB
All DBs
Position
3561537..3563393
Genome browser
AA seq
618 aa
AA seq
DB search
MSSSERTFRELGLSENLLRALDELGYENPTPIQSASIDPLMAGKDILGQAQTGTGKTGAF
ALPLLNKVTSQAVPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNA
LKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQR
QLALFSATMPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLE
VENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILIA
TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE
RATNSRISPMKVPSPETVAERRLSRLGEQLAQTMTQDLEFMREAVAQLCQQLEVDTDLLA
AALLHQVQQERPLQLPAIQERTRDERSERADRGDRTERGERRGRESRPMPASLGSAEALK
DNPDLKMCRYVIDVGRDNGVGVGNIVGAIANEANIDSRYIGAIQLYDAVTTVDLPDGMPK
EVLQHLKKVRVCGKPLNIREAGDQVFVDSGRGARSDRRPRGDRPMGDRKPRGDRPMGDRK
PRSDRPAGERKPRKPREE
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccagtgaaagaactttccgtgaactcggcttgtccgagaatttgttgcgtgct
cttgacgagctaggttacgaaaacccaacgccaatccaatcagccagtattgatccatta
atggctggcaaagatattttaggtcaggcacaaacaggtacaggtaaaactggcgccttc
gctctgcccctactcaacaaagtgaccagccaagctgttccacaaatcctcgtattagcg
ccaacccgcgaattagcggtgcaagttgctgaagcattcagcagctacgcgaaatttatg
aaaggtttccatgtactgccaatctatggcggtcaaagcatgcaccagcaattaaacgcc
ctcaagcgtggtccacaggttatcgtggggacaccaggccgtgttatggaccatatgcgc
cgtggcaccttaaagctggaaaccctgcaagccctcgttctagacgaagccgacgaaatg
ttaaagatgggctttatcgacgatatcgagtggattctggaacacacacctgaacaacgt
caacttgccctgttctcggccactatgccagagcaaattaagcgcgttgccaacaagcat
ttaaaagatgcgactaacatcagcatcgctgcgagccacactaccgttgactctatcgag
caacgtttcgtgcaagtgtctcagcacaacaaattagaagccttagttcgcgtattagaa
gttgaaaataccgaaggtatcatcatcttcgttcgtacccgtaactcatgtgttgaattg
gctgaaaaactcgaagcccgtggctatgcctcatcaccactacacggtgatatgaaccaa
caagcccgtgagcgtgcggttgaacagctgaaaagcggcaagttagacattctgatcgca
accgacgttgcggcccgtggtctagacgttgagcgtatcggccacgtagtgaactacgat
atcccttacgatactgaagcatacgttcaccgtatcggtcgtacaggccgtgctggccgt
accggtatggcaattctgttcgtgactagccgtgaaatgcgtatgctgcgcaccatcgag
cgcgcgactaacagtcgtatttcgccaatgaaagtaccaagcccagagacagttgcagaa
cgtcgtctgtcacgtctaggcgagcaattagcgcaaaccatgactcaagatttagagttc
atgcgtgaggcggttgcccagttatgccaacaactcgaagtcgatactgatctgttggct
gctgccctgctgcaccaagtacaacaagagcgtccactgcagttacctgcaatccaagag
cgtacccgtgatgagcgcagcgagcgtgcagaccgtggcgatcgcactgagcgtggtgaa
cgtcgtggtcgtgaatcacgcccaatgccagccagccttggcagcgcagaagcattaaaa
gacaacccagatctgaagatgtgccgttacgttatcgacgtgggtcgtgacaatggcgta
ggtgtaggcaatatcgtcggcgctatcgcaaacgaagctaacatcgacagccgttacatc
ggtgctatccagttatacgacgcagtaaccacagttgacctgccagacggcatgccaaaa
gaagtactgcaacacctgaagaaagttcgcgtttgcggcaagccactgaacatccgtgaa
gcgggcgatcaggtattcgtagactctggccgcggcgcacgcagcgaccgtcgcccacgt
ggcgatcgtccaatgggcgaccgtaaaccacgcggtgaccgtccaatgggcgatcgtaag
cctcgcagtgacagacctgcgggtgagcgcaagccacgtaaaccacgcgaagagtaa
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